Summary of Gene (J080020B11)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080020B11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 11261645 | -70 |
TSS clone peak | A | clone | + | 11261648 | -67 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATATAAGC | + | 11261612 | 11261620 | -103 | -95 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCATCC | + | 11261426 | 11261433 | -289 | -282 | |||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGTCCAGA | + | 11261443 | 11261450 | -272 | -265 | |||
OsREG649 | GGTCCAGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGACACGTGGC | + | 11261474 | 11261484 | -241 | -231 | |||
OsREG452 | CGACACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG434 | ACACGTGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG507 | CACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | TGATGGGCCTG | + | 11261493 | 11261503 | -222 | -212 | |||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |