PlantPromoterDB promoter information of J080020B11
Summary of Gene (J080020B11)
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Overview
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Focused view (chromosome 12: 11252565-11253764)
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Genome position
from initiation codon TSS from cDNA TSS information J080020B11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080020B11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 11261645 | -70 |
| TSS clone peak | A | clone | + | 11261648 | -67 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATATAAGC | + | 11261612 | 11261620 | -103 | -95 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCATCC | + | 11261426 | 11261433 | -289 | -282 | |||
| OsREG608 | GCCCATCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTCCAGA | + | 11261443 | 11261450 | -272 | -265 | |||
| OsREG649 | GGTCCAGA | PPDB Motif | PLACE Motif | ||||||
| REG | CGACACGTGGC | + | 11261474 | 11261484 | -241 | -231 | |||
| OsREG452 | CGACACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG509 | GACACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG434 | ACACGTGG | PPDB Motif | ACGT | PLACE Motif | |||||
| OsREG507 | CACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | TGATGGGCCTG | + | 11261493 | 11261503 | -222 | -212 | |||
| OsREG607 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG590 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG513 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||