PlantPromoterDB promoter information of J080027O19
Summary of Gene (J080027O19)
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Overview
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Focused view (chromosome 5: 6027721-6028920)
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Genome position
from initiation codon J080004M24 J080004O15 J080006E14 J080006I07 J080007N13 J080009C21 J080009L03 J080010F10 J080015H04 J080015L04 J080018C21 J080022M22 J080030I07 J080037P07 J080044C18 J080049F14 J080050F04 J080052B18 J080081B11 J080083G12 J080086A11 J080087C06 J080088E06 J080091O21 J080094N23 TSS from cDNA TSS information J080027O19 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080027O19
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 6028154 | -567 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGACC | + | 6027906 | 6027913 | -815 | -808 | |||
| OsREG650 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TGTGGGCCCCAC | + | 6027915 | 6027926 | -806 | -795 | |||
| OsREG627 | TGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCACGTG | + | 6028021 | 6028028 | -700 | -693 | |||
| OsREG507 | GCCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | CGGGTCCC | + | 6028090 | 6028097 | -631 | -624 | |||
| OsREG569 | CGGGTCCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CGGCCCGG | + | 6028106 | 6028113 | -615 | -608 | |||
| OsREG544 | CGGCCCGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||