Summary of Gene (J080030L05)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-103-F09 011-009-E03 011-025-A02 011-035-H08 014-043-F08 AK060711 AK060963 AK104447 AK104504 AK104629 J023003P15 J023075H14 J033101N17 J033132M11 J065081C24 J080004L10 J080009H21 J080013F01 J080022K24 J080023C22 J080024M16 J080026K06 J080030J23 J080031G03 J080033C03 J080033D02 J080035A11 J080035A14 J080039E08 J080040L15 J080040M03 J080041L21 J080043E09 J080048B14 J080048O09 J080051H01 J080052H06 J080065K05 J080066D10 J080066E23 J080069F10 J080074M06 J080075D13 J080076G02 J080082G15 J080082K06 J080082P12 J080085F01 J080090H22 J080092D07 J080094M03 J080094O10 J090008I06 J100058N20 J100060M07 J100062M08 J100064L07 J100073H16 J100074C10 J100075N06 J100087P11 J100088B13 J100088J16 J100088L17 J100088O12 TSS from cDNA TSS information J080030L05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 4295324 | -938 |
TSS clone peak | A | clone | + | 4295325 | -937 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CACCTATATAAC | + | 4295289 | 4295300 | -973 | -962 |
Y Patch | CCTCTCTCCC | + | 4295300 | 4295309 | -962 | -953 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATGGGCCAA | + | 4295106 | 4295116 | -1156 | -1146 | |||
OsREG480 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AACTGGGC | + | 4295140 | 4295147 | -1122 | -1115 | |||
OsREG425 | AACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACGGCCCATCT | + | 4295162 | 4295173 | -1100 | -1089 | |||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAAGGCCCAGCCCA | + | 4295184 | 4295197 | -1078 | -1065 | |||
OsREG497 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCACGCC | + | 4295214 | 4295221 | -1048 | -1041 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTCCAGA | + | 4295239 | 4295246 | -1023 | -1016 | |||
OsREG649 | GGTCCAGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |