PlantPromoterDB promoter information of J080039B11
Summary of Gene (J080039B11)
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Overview
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Focused view (chromosome 2: 6749182-6750381)
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Genome position
from initiation codon 013-077-C09 AK103901 J013028J04 J013033K10 J013056J20 J013058O03 J013088O22 J013124E21 J023023L03 J023023L21 J023041D15 J023056F10 J023061N01 J023065O09 J023091A21 J023106J17 J023119N08 J033030I12 J033050H18 J033058A19 J033065L22 J033098O13 J033100M18 J033111A16 J033111H02 J033114B12 J033121L14 J033125A21 J033128G23 J033132O11 J033148C12 J033150K18 J043017F03 J043020L02 J043032J02 J053047N10 J053056B22 J053089P04 J065051K09 J065064H24 J090001L06 J090009K14 J090015E16 J090017C24 J090028K12 J090042H11 J090058G15 J090058H23 J090061G20 J090069N23 J090071A08 J090072B07 J090074A08 J090077B15 J090081K06 J090083I05 J090091O22 J090091P14 J090097L10 J100026B11 J100044M01 J100046F10 J100047D17 J100051K14 J100060D22 J100060H18 J100070I06 J100071C04 J100078M13 J100080E17 J100083I09 TSS from cDNA TSS information J080039B11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080039B11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6750988 | -244 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAGGCCCGTT | + | 6750797 | 6750807 | -435 | -425 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG424 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | |||||
| REG | ATCCAACGG | + | 6750811 | 6750819 | -421 | -413 | |||
| OsREG481 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| OsREG548 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GGGCCAGA | + | 6750833 | 6750840 | -399 | -392 | |||
| OsREG638 | GGGCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCGTCCGATC | + | 6750886 | 6750896 | -346 | -336 | |||
| OsREG562 | GCCGTCCG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
| OsREG484 | CGTCCGAT | PPDB Motif | PLACE Motif | ||||||
| OsREG589 | GTCCGATC | PPDB Motif | PLACE Motif | ||||||
| REG | ATCGGACGGCCGAGAT | + | 6750914 | 6750929 | -318 | -303 | |||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
| OsREG562 | CGGACGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG635 | GGCCGAGA | PPDB Motif | PLACE Motif | ||||||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGCGC | + | 6750931 | 6750938 | -301 | -294 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||