Summary of Gene (J080039B11)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J033100M18 TSS from cDNA TSS information J080039B11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 6750988 | -244 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAAGGCCCGTT | + | 6750797 | 6750807 | -435 | -425 | |||
OsREG497 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG424 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG  | PLACE Motif |   | ||||
REG | ATCCAACGG | + | 6750811 | 6750819 | -421 | -413 | |||
OsREG481 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG548 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | GGGCCAGA | + | 6750833 | 6750840 | -399 | -392 | |||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCGTCCGATC | + | 6750886 | 6750896 | -346 | -336 | |||
OsREG562 | GCCGTCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | CCGTCCGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG484 | CGTCCGAT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG589 | GTCCGATC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCGGACGGCCGAGAT | + | 6750914 | 6750929 | -318 | -303 | |||
OsREG484 | ATCGGACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | TCGGACGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG562 | CGGACGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG624 | GGACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG635 | GGCCGAGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG485 | GCCGAGAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACCCGCGC | + | 6750931 | 6750938 | -301 | -294 | |||
OsREG439 | ACCCGCGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |