PlantPromoterDB promoter information of J080039B11
Summary of Gene (J080039B11)
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Overview
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Focused view (chromosome 2: 6749582-6750781)
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Genome position
from initiation codon J033100M18 TSS from cDNA TSS information J080039B11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080039B11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6750988 | -244 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAGGCCCGTT | + | 6750797 | 6750807 | -435 | -425 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG424 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | |||||
| REG | ATCCAACGG | + | 6750811 | 6750819 | -421 | -413 | |||
| OsREG481 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| OsREG548 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GGGCCAGA | + | 6750833 | 6750840 | -399 | -392 | |||
| OsREG638 | GGGCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCGTCCGATC | + | 6750886 | 6750896 | -346 | -336 | |||
| OsREG562 | GCCGTCCG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
| OsREG484 | CGTCCGAT | PPDB Motif | PLACE Motif | ||||||
| OsREG589 | GTCCGATC | PPDB Motif | PLACE Motif | ||||||
| REG | ATCGGACGGCCGAGAT | + | 6750914 | 6750929 | -318 | -303 | |||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
| OsREG562 | CGGACGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG635 | GGCCGAGA | PPDB Motif | PLACE Motif | ||||||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGCGC | + | 6750931 | 6750938 | -301 | -294 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||