PlantPromoterDB promoter information of J080040H18

Summary of Gene (J080040H18)

Organism	Oryza sativa
Chromosome	8
Locus	Os08g0130500 NCBI
Gene model	J080040H18
Description	NONE

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Overview

Focused view (chromosome 8: 1722612-1721413)

`Genome position from initiation codon` 006-024-B12 006-032-F11 006-047-B12 006-058-H06 006-062-D07 006-083-F11 006-084-A11 006-096-F12 006-105-A04 006-110-D11 011-022-D11 AK064857 D21130 J013000H12 J013024M17 J013028H09 J013045N22 J013092K19 J013106L12 J013107A03 J013109E12 J013114N08 J013120J12 J013121E21 J013135P20 J023006J08 J023014L16 J023020N03 J023027M24 J023029D18 J023030A14 J023041G23 J023049H05 J023060I23 J023099D07 J023104A20 J023105F18 J023112D21 J023122M18 J023139J20 J023149L20 J023150G04 J033036G02 J033045P13 J033046A22 J033086H16 J033087D07 J033089M14 J033095F14 J033108M01 J033117A17 J033122F03 J033126A04 J033144D13 J033145D13 J043022M09 J053025I11 J053027K06 J053029D15 J053048I22 J053055I01 J053079P07 J053090J23 J053094C24 J065023F18 J065029I12 J065044B18 J065045C07 J065063K22 J065093D11 J065096P09 J065099N04 J065103K24 J065110H12 J065132F24 J065157K16 J065185D11 J065202E16 J065217D07 J075053I19 J075055L24 J075056H24 J075070D02 J075084O15 J075090F24 J075135E03 J075174A01 J075188F05 J075192C17 J080001B02 J080001C08 J080002D15 J080002I03 J080003E24 J080004M10 J080005C18 J080006A12 J080006F04 J080006M11 J080008J11 J080008J22 J080009F14 J080010B12 J080010G14 J080010N07 J080011D04 J080011G10 J080011O19 J080013K23 J080013M09 J080013N12 J080013O15 J080014C13 J080014D21 J080014F08 J080014N08 J080014P19 J080015L09 J080015P15 J080018P10 J080020C06 J080022C14 J080022E01 J080022P04 J080022P10 J080023B20 J080023G19 J080024N15 J080025E11 J080025G24 J080026B01 J080026B05 J080027L17 J080028K02 J080029L23 J080030D08 J080031C03 J080031K02 J080032C16 J080033F10 J080033G12 J080033K03 J080034B03 J080034N21 J080034O03 J080035G10 J080038E14 J080039A19 J080039G10 J080039J01 J080039J09 J080040F07 J080041E08 J080041E16 J080041L08 J080042A07 J080044E02 J080045K03 J080046O03 J080047F08 J080048H01 J080048I05 J080048N06 J080050A07 J080050B04 J080050E21 J080051J01 J080051K02 J080051L02 J080052C20 J080052I22 J080052J21 J080052K22 J080055A05 J080055I12 J080056A21 J080056N11 J080057D02 J080058H21 J080058P16 J080059M03 J080059N17 J080060F13 J080060H06 J080060J03 J080060O09 J080060P22 J080061F06 J080061H21 J080061O13 J080062J07 J080063A08 J080063F19 J080063O18 J080065D15 J080066E13 J080068L01 J080068P07 J080069I21 J080070M04 J080071E01 J080071J08 J080071M23 J080072A03 J080072G18 J080075A04 J080075E19 J080075P18 J080076N11 J080077A11 J080077D22 J080077H18 J080077L03 J080078D02 J080078L05 J080078N20 J080079I20 J080081D04 J080082A07 J080082E24 J080084A22 J080084E15 J080084G06 J080086A05 J080086F09 J080087B11 J080087H12 J080088I05 J080088N08 J080088P07 J080089A09 J080089D21 J080089F24 J080089H22 J080089I04 J080090D01 J080091F09 J080091G18 J080091L24 J080091M12 J080091N12 J080093A15 J080093C08 J080093I08 J080093P21 J080094E18 J080094F15 J080094J21 J080095A09 J080096G05 J080096K07 J080097M17 J080097P21 J080302B15 J080306J15 J080306O13 J080307C15 J080307I04 J080307L05 J080308F11 J080311C04 J080311I07 J080312C01 J080312O08 J080315F14 J080318K13 J080319A17 J090001I01 J090002O18 J090007A08 J090007F22 J090008D09 J090008L07 J090008O08 J090012N11 J090013M05 J090020E08 J090020O20 J090021I10 J090023D07 J090023K22 J090023O08 J090028D21 J090029H14 J090029L12 J090030C05 J090031D18 J090032G10 J090034J22 J090034K16 J090036D10 J090037N17 J090043P17 J090044L20 J090045N16 J090048K03 J090048K10 J090049O07 J090055H23 J090056G12 J090056G16 J090059B16 J090066H21 J090067D22 J090072M07 J090073J21 J090075A15 J090079J09 J090080L07 J090084A03 J090085B07 J090088H11 J090090J12 J090091I21 J090091L02 J090093G18 J090094D23 J090098L19 J100017I22 J100018F08 J100018G19 J100019B05 J100019J18 J100019L04 J100023M06 J100024J23 J100024P09 J100027I05 J100029G03 J100029K08 J100031J17 J100037L16 J100038C05 J100039D19 J100041L02 J100045B08 J100045B15 J100047G07 J100047P19 J100048I15 J100049M16 J100049P18 J100050E21 J100051N02 J100052M02 J100055M24 J100056K11 J100059F20 J100059J15 J100068C19 J100068G06 J100069N02 J100073N04 J100074B05 J100080P13 J100083P09 J100084B11 J100085B07 J100086O20 J100087B02 J100089B14 TSS from cDNA TSS information J080040H18 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of J080040H18

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 1722140 -128

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	1722140	-128

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CCACTATAAATA - 1722167 1722178 -155 -166

Y Patch CTCCTCCTC - 1722093 1722101 -81 -89

Y Patch TCCCTCTC - 1722179 1722186 -167 -174

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CCACTATAAATA`	-	1722167	1722178	-155	-166
Y Patch	`CTCCTCCTC`	-	1722093	1722101	-81	-89
Y Patch	`TCCCTCTC`	-	1722179	1722186	-167	-174
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCAAGCCCATCAGGCCCACCAAC - 1722202 1722224 -190 -212

OsREG519 CCAAGCCC                PPDB Motif GCCCA PLACE Motif

OsREG496 CAAGCCCA               PPDB Motif GCCCA PLACE Motif

OsREG429   AAGCCCAT              PPDB Motif GCCCA PLACE Motif

OsREG466    AGCCCATC             PPDB Motif GCCCA PLACE Motif

OsREG607     GCCCATCA            PPDB Motif GCCCA PLACE Motif

OsREG646          TCAGGCCC       PPDB Motif GCCCA PLACE Motif

OsREG513           CAGGCCCA      PPDB Motif GCCCA PLACE Motif

OsREG472            AGGCCCAC     PPDB Motif GCCCA PLACE Motif

OsREG628             GGCCCACC    PPDB Motif GCCCA PLACE Motif

OsREG599              GCCCACCA   PPDB Motif GCCCA PLACE Motif

OsREG520                CCACCAAC PPDB Motif CCAACGG PLACE Motif

REG AGCCCAATAAGGCCCATCT - 1722257 1722275 -245 -263

OsREG460 AGCCCAAT            PPDB Motif GCCCA PLACE Motif

OsREG596 GCCCAATA           PPDB Motif GCCCA PLACE Motif

OsREG430         AAGGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG474          AGGCCCAT   PPDB Motif GCCCA PLACE Motif

OsREG590           GGCCCATC PPDB Motif GCCCA PLACE Motif

OsREG456            GCCCATCT PPDB Motif GCCCA PLACE Motif

REG CAAGGCCCATAC - 1722283 1722294 -271 -282

OsREG497 CAAGGCCC     PPDB Motif GCCCA PLACE Motif

OsREG430 AAGGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG474   AGGCCCAT   PPDB Motif GCCCA PLACE Motif

OsREG630    GGCCCATA PPDB Motif GCCCA PLACE Motif

OsREG606     GCCCATAC PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCAAGCCCATCAGGCCCACCAAC`		-	1722202	1722224	-190	-212
	OsREG519	`CCAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG496	`CAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG429	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG466	`AGCCCATC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG607	`GCCCATCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG646	`TCAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG513	`CAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG472	`AGGCCCAC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG628	`GGCCCACC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG599	`GCCCACCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG520	`CCACCAAC`		PPDB Motif	`CCAACGG`	PLACE Motif
REG	`AGCCCAATAAGGCCCATCT`		-	1722257	1722275	-245	-263
	OsREG460	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG596	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG430	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG474	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG590	`GGCCCATC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG456	`GCCCATCT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAAGGCCCATAC`		-	1722283	1722294	-271	-282
	OsREG497	`CAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG430	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG474	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG630	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG606	`GCCCATAC`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None