PlantPromoterDB promoter information of J080041G13
Summary of Gene (J080041G13)
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Overview
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Focused view (chromosome 2: 5747380-5746181)
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Genome position
from initiation codon AK099277 AK101844 J080017J03 J080044B13 J080044L10 J080046H11 J080057J01 TSS from cDNA TSS information J080041G13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080041G13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 5748113 | -83 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACTGGGCCCCACCTG | - | 5748167 | 5748181 | -137 | -151 | |||
| OsREG454 | ACTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG579 | CTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCTGGGCCTA | - | 5748227 | 5748236 | -197 | -206 | |||
| OsREG620 | GCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCGGGCC | - | 5748254 | 5748261 | -224 | -231 | |||
| OsREG441 | ACCGGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||