Summary of Gene (J080041L21)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-103-F09 011-009-E03 011-035-H08 014-043-F08 AK060711 AK060963 AK104447 AK104504 AK104629 J023003P15 J023075H14 J033101N17 J033132M11 J065081C24 J090008I06 J100058N20 J100060M07 J100062M08 J100064L07 J100073H16 J100074C10 J100075N06 J100087P11 J100088B13 J100088J16 J100088L17 TSS from cDNA TSS information J080041L21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 4295324 | -938 |
TSS clone peak | A | clone | + | 4295325 | -937 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CACCTATATAAC | + | 4295289 | 4295300 | -973 | -962 |
Y Patch | CCTCTCTCCC | + | 4295300 | 4295309 | -962 | -953 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATGGGCCAA | + | 4295106 | 4295116 | -1156 | -1146 | |||
OsREG480 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AACTGGGC | + | 4295140 | 4295147 | -1122 | -1115 | |||
OsREG425 | AACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACGGCCCATCT | + | 4295162 | 4295173 | -1100 | -1089 | |||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAAGGCCCAGCCCA | + | 4295184 | 4295197 | -1078 | -1065 | |||
OsREG497 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCACGCC | + | 4295214 | 4295221 | -1048 | -1041 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTCCAGA | + | 4295239 | 4295246 | -1023 | -1016 | |||
OsREG649 | GGTCCAGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |