Summary of Gene (J080044C19)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080044C19 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 34590192 | -827 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCC | - | 34590150 | 34590157 | -785 | -792 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTTTGGGCCGGGCCGTC | - | 34590247 | 34590263 | -882 | -898 | |||
OsREG593 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG538 | GGGCCGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG614 | GGCCGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG544 | CCGGGCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG446 | CGGGCCGT | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG584 | GGGCCGTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCGTG | - | 34590268 | 34590276 | -903 | -911 | |||
OsREG446 | CGGGCCGT | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG504 | GGGCCGTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCGGGCCGGC | - | 34590295 | 34590307 | -930 | -942 | |||
OsREG538 | GGGCCGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG614 | GGCCGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG544 | CCGGGCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG615 | GGGCCGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCCCGGC | - | 34590312 | 34590319 | -947 | -954 | |||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GAAGCCCAAG | - | 34590323 | 34590332 | -958 | -967 | |||
OsREG582 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG459 | AGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCGGCCCAGC | - | 34590344 | 34590354 | -979 | -989 | |||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |