PlantPromoterDB promoter information of J080047B07
Summary of Gene (J080047B07)
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Overview
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Focused view (chromosome 7: 1201308-1200109)
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Genome position
from initiation codon J033103K08 J065197L01 J065206N07 J080011N05 J080021N11 J080025M24 J080031E13 J080061L03 J080062C18 J080063E20 J080063O12 J080070D20 J080074J17 J080076K17 J080079K21 J080080D02 J080088E12 J080092I18 TSS from cDNA TSS information J080047B07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080047B07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 1200351 | -93 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGGCCCACCTG | - | 1200433 | 1200444 | -175 | -186 | |||
| OsREG647 | GGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCAGCCCATCA | - | 1200479 | 1200489 | -221 | -231 | |||
| OsREG591 | GCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | CAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG466 | AGCCCATC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG607 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||