Summary of Gene (J080047B07)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J033103K08 J065197L01 J065206N07 J080011N05 J080021N11 J080025M24 J080031E13 J080061L03 J080062C18 J080063E20 J080063O12 J080070D20 J080074J17 J080076K17 J080079K21 J080080D02 J080088E12 J080092I18 TSS from cDNA TSS information J080047B07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 1200351 | -93 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGGCCCACCTG | - | 1200433 | 1200444 | -175 | -186 | |||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG514 | CCCACCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCAGCCCATCA | - | 1200479 | 1200489 | -221 | -231 | |||
OsREG591 | GCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | AGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG607 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |