Summary of Gene (J080050G11)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080050G11 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 858487 | -84 |
TSS clone peak | G | clone | - | 858482 | -79 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCCTATAAATC | - | 858511 | 858522 | -108 | -119 |
Y Patch | CCTCCCCC | - | 858500 | 858507 | -97 | -104 |
Y Patch | TCCCCCTCCC | - | 858519 | 858528 | -116 | -125 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCTGGGCCCCACA | - | 858561 | 858573 | -158 | -170 | |||
OsREG550 | CCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG579 | CTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG611 | GCCCCACA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTGGCCCATGGGCCGCCACGTC | - | 858641 | 858662 | -238 | -259 | |||
OsREG660 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG525 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG517 | GGCCCATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | AACGGGCC | - | 858769 | 858776 | -366 | -373 | |||
OsREG424 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |