PlantPromoterDB promoter information of J080052N17
Summary of Gene (J080052N17)
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Overview
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Focused view (chromosome 1: 27018794-27019993)
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Genome position
from initiation codon J023007G13 J075013C23 J075063N02 J090058G08 J100061A07 TSS from cDNA TSS information J080052N17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080052N17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | + | 27019945 | AK069077, AK069077 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTC | + | 27019899 | 27019906 | AK069077 | |
| Y Patch | TTCCCCTC | + | 27019939 | 27019946 | AK069077 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTGTCACT | + | 27019702 | 27019709 | AK069077 | ||||
| OsREG477 | GTGTCACT | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | AGATGGGCCCT | + | 27019751 | 27019761 | AK069077 | ||||
| OsREG456 | AGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG590 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG489 | ATGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG475 | TGGGCCCT | PPDB Motif | GCCCA | PLACE Motif | |||||