Summary of Gene (J080053B04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080053B04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 30744593 | -893 |
TSS clone peak | A | clone | - | 30744278 | -578 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGA | - | 30744502 | 30744509 | -802 | -809 | |||
OsREG548 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CGTGTGGC | - | 30744719 | 30744726 | -1019 | -1026 | |||
OsREG573 | CGTGTGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCCACGTGT | - | 30744745 | 30744754 | -1045 | -1054 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG507 | GCCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG434 | CCACGTGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | GGCCGAGAT | - | 30744757 | 30744765 | -1057 | -1065 | |||
OsREG635 | GGCCGAGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG485 | GCCGAGAT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |