PlantPromoterDB promoter information of J080053B04
Summary of Gene (J080053B04)
|
Overview
|
Focused view (chromosome 11: 30753600-30752401)
|
Genome position
from initiation codon TSS from cDNA TSS information J080053B04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of J080053B04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 30744593 | -893 |
| TSS clone peak | A | clone | - | 30744278 | -578 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGA | - | 30744502 | 30744509 | -802 | -809 | |||
| OsREG548 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | CGTGTGGC | - | 30744719 | 30744726 | -1019 | -1026 | |||
| OsREG573 | CGTGTGGC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCCACGTGT | - | 30744745 | 30744754 | -1045 | -1054 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG507 | GCCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG434 | CCACGTGT | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | GGCCGAGAT | - | 30744757 | 30744765 | -1057 | -1065 | |||
| OsREG635 | GGCCGAGA | PPDB Motif | PLACE Motif | ||||||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||