Summary of Gene (J080064C23)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080064C23 5'->3' (+) Promoter sequence J075027M08
J075061E06 J075160M13 J090011G22 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 33261776 | -88 |
TSS clone peak | A | clone | + | 33261781 | -83 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGGTGGGCCGGA | + | 33261580 | 33261591 | -284 | -273 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | GTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCGGGCC | + | 33261607 | 33261614 | -257 | -250 | |||
OsREG633 | TCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCTGGCCCGGCCCAAAC | + | 33261642 | 33261658 | -222 | -206 | |||
OsREG638 | TCTGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGTGGGCCCACCTG | + | 33261708 | 33261722 | -156 | -142 | |||
OsREG600 | GGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG514 | CCCACCTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |