PlantPromoterDB promoter information of J080067C17
Summary of Gene (J080067C17)
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Overview
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Focused view (chromosome 2: 5749030-5747831)
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Genome position
from initiation codon AK099277 AK101844 J080001G13 J080011J23 J080015F12 J080017J03 J080030J24 J080038H02 J080041G13 J080044B13 J080044L10 J080046H11 J080057J01 J080062E13 J080062N11 J080063C17 J080064K11 J080064N09 J080067C23 J080069J21 J080070L23 J080085N15 J080094F03 TSS from cDNA TSS information J080067C17 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080067C17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 5748113 | -83 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACTGGGCCCCACCTG | - | 5748167 | 5748181 | -137 | -151 | |||
| OsREG454 | ACTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG579 | CTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCTGGGCCTA | - | 5748227 | 5748236 | -197 | -206 | |||
| OsREG620 | GCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCGGGCC | - | 5748254 | 5748261 | -224 | -231 | |||
| OsREG441 | ACCGGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||