PlantPromoterDB promoter information of J080069O13
Summary of Gene (J080069O13)
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Overview
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Focused view (chromosome 11: 30741950-30740751)
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Genome position
from initiation codon 003-130-G06 005-012-E05 006-021-F04 006-031-E07 006-035-C03 006-038-D10 006-043-A10 006-043-G08 006-046-C03 006-055-G09 006-085-A03 006-118-E05 AB034698 AB034748 AB110180 AK058310 AK060841 AK060847 AK064986 AK104332 AK119513 J013001C24 J013024I02 J013044O11 J013048O10 J013051A08 J013055H23 J013070N15 J013074C16 J013096P16 J013109A14 J013112C07 J013112N16 J013123B03 J013128G01 J013132L17 J013158I17 J013159L01 J023001H04 J023004L05 J023013G12 J023020K06 J023031J19 J023034A05 J023034E21 J023041M12 J023041P06 J023044C04 J023047H01 J023048D08 J023052H08 J023054D24 J023063G11 J023068O21 J023074C13 J023078O06 J023089K10 J023100O05 J023107N16 J023120L08 J023123N23 J023127M10 J023128C22 J023129C04 J023146H08 J053063N05 J053066F02 J053066N18 J053076G01 J065012O05 J065035L06 J065037M01 J065045N23 J065058F09 J065072E14 J065073I20 J065076B05 J065093B09 J065117A22 J065149J21 J065155M04 J065161J21 J065163H19 J065192A15 J065211L18 J075001K13 J075002J24 J075004N18 J075025H21 J075028F20 J075039F23 J075043M08 J075057D02 J075059I01 J075069P10 J075073D08 J075084I17 J075089I04 J075093O18 J075097N13 J075114B02 J075123E10 J075128C19 J075135F05 J075136A04 J075141B05 J075169H18 J075183L14 J075191N03 J080001C11 J080004F18 J080004H21 J080004O09 J080005J02 J080006I03 J080006J17 J080009I09 J080010I06 J080011A17 J080014N22 J080016E24 J080016P08 J080017G22 J080017P09 J080018D23 J080018E15 J080020K04 J080024P09 J080025G15 J080025N11 J080026H10 J080026N06 J080027C07 J080027M21 J080028I03 J080028K11 J080029B19 J080029G14 J080029G20 J080030A16 J080031C05 J080033M16 J080034C24 J080034F11 J080036B03 J080036C14 J080037C01 J080038M20 J080039K03 J080040M24 J080040P19 J080042L24 J080042O06 J080043A22 J080043N19 J080044A18 J080044P14 J080045K12 J080045N16 J080047A16 J080047B09 J080047E08 J080047G06 J080048H04 J080049B17 J080049D05 J080049G23 J080050D03 J080050J24 J080050O20 J080052E24 J080052K11 J080053B04 J080053D20 J080053E16 J080054H20 J080054H22 J080054N24 J080055H08 J080056H08 J080056H12 J080057N11 J080058D08 J080058D21 J080058E10 J080060J10 J080061O04 J080065M18 J080066D15 J080067E22 J080067N20 J080068F02 J080069G20 J080070I20 J080071H11 J080071H17 J080071O18 J080077G14 J080077H17 J080078B18 J080078D24 J080079H02 J080079J02 J080081O20 J080082E02 J080082N12 J080084D09 J080084E18 J080085P08 J080086B21 J080086L10 J080086L18 J080087D12 J080087E24 J080087G12 J080088J22 J080090C18 J080090L02 J080092N05 J080092P20 J080094D15 J080095A11 J080095K13 J080096L16 J080097F16 J080305J21 J080308I22 J080310E21 J080310G09 J090003A12 J090032M14 J090045I12 J090076M15 J090088C17 J090094B06 U74321 TSS from cDNA TSS information J080069O13 5'->3' (-) Promoter sequence Os11g0706800
TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080069O13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 30744593 | -893 |
| TSS clone peak | A | clone | - | 30744278 | -578 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGA | - | 30744502 | 30744509 | -802 | -809 | |||
| OsREG548 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | CGTGTGGC | - | 30744719 | 30744726 | -1019 | -1026 | |||
| OsREG573 | CGTGTGGC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCCACGTGT | - | 30744745 | 30744754 | -1045 | -1054 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG507 | GCCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG434 | CCACGTGT | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | GGCCGAGAT | - | 30744757 | 30744765 | -1057 | -1065 | |||
| OsREG635 | GGCCGAGA | PPDB Motif | PLACE Motif | ||||||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||