PlantPromoterDB promoter information of J080072P12
Summary of Gene (J080072P12)
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Overview
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Focused view (chromosome 2: 83244-82045)
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Genome position
from initiation codon 013-006-A02 013-011-F03 AK067642 AK072105 J013027G04 J013034P10 J013039D15 J013048P14 J013050O03 J013056H19 J013071D11 J013097D17 J013104F13 J013108J23 J013119J12 J013122N16 J013146M24 J013149E16 J013157E04 J023012P06 J023050C21 J023057K22 J023107F18 J023110B19 J023111H01 J023148P04 J043009E13 J043009H22 J065007D17 J065038K16 J065042A01 J065075C20 J065091I04 J065131A03 J075152O18 J075152P17 J080001F06 J080002H09 J080004L23 J080005H18 J080010D22 J080010G17 J080013E07 J080013P18 J080015D22 J080025H24 J080026O03 J080036J01 J080036L03 J080037O13 J080041D10 J080045J04 J080046J06 J080048G16 J080048I21 J080056F16 J080056L16 J080057C02 J080058D03 J080061B19 J080061E16 J080061L22 J080062P08 J080067C01 J080067G13 J080068F20 J080072H15 J080079O21 J080081J15 J080081K02 J080085O11 J080086N15 J080087E22 J080087O15 J080091D07 J080091J02 J080091L21 J080093B13 J100069F01 J100086B08 TSS from cDNA TSS information J080072P12 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080072P12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 82880 | -636 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATTTGGGCCCC | - | 82972 | 82982 | -728 | -738 | |||
| OsREG493 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG639 | TTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCACACG | - | 82986 | 82993 | -742 | -749 | |||
| OsREG573 | GCCACACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||