Summary of Gene (J080080M22)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK067376 AK099188 AK104773 J013106F16 J013123H22 J023029J02 J023029J03 J033138N08 J075011F05 J075022F10 J075071L13 J075094B08 J075119B21 J075140L02 J075199O21 J080001I17 J080005M04 J080011P17 J080026B14 J080026C12 J080030N16 J080035K23 J080039J22 J080045D04 J080050C06 J080050K14 J080051I09 J080053F18 J080053G10 J080055F05 J080057E22 J080058F17 J080063C18 J080065E02 J080066E06 J080067O05 J080068N15 J080071O04 J080074A20 J080074E14 J080074L05 J080075E08 J080075H07 J080077D04 J080077N15 J080078A07 J080079H22 J080080F20 J080081K09 J080081L04 J080090K09 J080093O13 J080094A18 J080094E10 J080094H06 J080096I21 J100081A19 TSS from cDNA TSS information J080080M22 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | - | 3156742 | -809 |
TSS clone peak | C | clone | - | 3156741 | -808 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCCTCC | - | 3156712 | 3156723 | -779 | -790 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TACGGCCCATTA | - | 3156796 | 3156807 | -863 | -874 | |||
OsREG645 | TACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG610 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGGAC | - | 3156827 | 3156834 | -894 | -901 | |||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TAGGCCCAATT | - | 3156906 | 3156916 | -973 | -983 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTTGGGCCCTAATGGGCTCCAGGCCCAACC | - | 3156922 | 3156951 | -989 | -1018 | |||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG475 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG524 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG595 | GCCCAACC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |