PlantPromoterDB promoter information of J080091G21
Summary of Gene (J080091G21)
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Overview
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Focused view (chromosome 12: 4462815-4461616)
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Genome position
from initiation codon 006-024-G04 006-065-G03 006-085-A08 006-103-A05 006-103-H09 009-070-G10 009-156-H08 009-158-A03 009-163-B11 AJ005841 AK061678 AK120500 J013040H19 J013041B20 J013122B18 J013128C16 J023126A11 J023149O08 J033113L02 J065026F18 J065027A10 J065029H04 J065036L19 J065053G22 J065060P10 J065063G08 J065070F04 J065071J12 J065082A20 J065088K18 J065090J21 J065110I15 J065142N11 J065152O15 J065175N18 J065181H15 J065217M05 J075005B13 J075010A01 J075025N08 J075025O15 J075026N03 J075029K03 J075046J23 J075048H19 J075055G13 J075057N05 J075074K15 J075078O08 J075083L08 J075085A13 J075090M08 J075099F01 J075102M01 J075122C01 J075127M13 J075130F22 J075148P15 J075154P15 J075164F18 J075169C02 J075182G19 J075185N19 J075191F06 J075195E16 J080003F14 J080015K01 J080030O11 J080032L01 J080034L14 J080036E01 J080039E23 J080043N22 J080046F10 J080046N09 J080063B22 J080063F13 J080091K23 J080096L19 J080303H17 J080303M11 J080304C19 J080304E11 J080306N11 J080307N23 J080308G14 J080309F13 J080313I18 J080315E23 J080316D18 J080319M07 J080319O18 J090006J15 J090024O07 J090095K21 J100031C19 J100040B18 J100042M17 J100060L05 J100060O12 J100063O11 J100070B22 J100077D15 J100090B05 TSS from cDNA TSS information J080091G21 5'->3' (-) Promoter sequence J065116B16
TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J080091G21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 4461792 | -77 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCCTCCTCTT | - | 4461770 | 4461782 | -55 | -67 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGGGCC | - | 4461933 | 4461940 | -218 | -225 | |||
| OsREG441 | ACCGGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCAATT | - | 4462071 | 4462078 | -356 | -363 | |||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||