PlantPromoterDB promoter information of J080095K09
Summary of Gene (J080095K09)
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Overview
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Focused view (chromosome 2: 6750982-6752181)
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Genome position
from initiation codon 009-127-G02 AK061944 AK104946 D89802 J013042L22 J013056A14 J013120G13 J013155K19 J023002B10 J023080J19 J023081C08 J023090H05 J023091M07 J023115F09 J033025I23 J033026G12 J033035E15 J033040N13 J033046C17 J033069F02 J033071B16 J033071N22 J033088J02 J033092N24 J033093I09 J033099G13 J033100M18 J033126G06 J043003G15 J043010M11 J043024O20 J065092N03 J080004D17 J080010L09 J080021I11 J080022L01 J080029B01 J080032D11 J080039B11 J080040K17 J080041B21 J080052L24 J080054M12 J080057B15 J080078G15 J080078H06 J080079M03 J080088H16 J080093C11 J080095O20 J090009J19 J090040D04 J090052E14 J090063B14 J090071K04 J090075E12 J090087A06 J090094P03 J090098M14 TSS from cDNA TSS information J080095K09 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080095K09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6750988 | -244 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAGGCCCGTT | + | 6750797 | 6750807 | -435 | -425 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG424 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | |||||
| REG | ATCCAACGG | + | 6750811 | 6750819 | -421 | -413 | |||
| OsREG481 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| OsREG548 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GGGCCAGA | + | 6750833 | 6750840 | -399 | -392 | |||
| OsREG638 | GGGCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCGTCCGATC | + | 6750886 | 6750896 | -346 | -336 | |||
| OsREG562 | GCCGTCCG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
| OsREG484 | CGTCCGAT | PPDB Motif | PLACE Motif | ||||||
| OsREG589 | GTCCGATC | PPDB Motif | PLACE Motif | ||||||
| REG | ATCGGACGGCCGAGAT | + | 6750914 | 6750929 | -318 | -303 | |||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
| OsREG562 | CGGACGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG635 | GGCCGAGA | PPDB Motif | PLACE Motif | ||||||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGCGC | + | 6750931 | 6750938 | -301 | -294 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||