Summary of Gene (J080096I21)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080096I21 5'->3' (-) Promoter sequence Os07g0158400
TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | - | 3156742 | -809 |
TSS clone peak | C | clone | - | 3156741 | -808 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCCTCC | - | 3156712 | 3156723 | -779 | -790 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TACGGCCCATTA | - | 3156796 | 3156807 | -863 | -874 | |||
OsREG645 | TACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG610 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGGAC | - | 3156827 | 3156834 | -894 | -901 | |||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TAGGCCCAATT | - | 3156906 | 3156916 | -973 | -983 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTTGGGCCCTAATGGGCTCCAGGCCCAACC | - | 3156922 | 3156951 | -989 | -1018 | |||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG475 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG524 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG595 | GCCCAACC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |