Summary of Gene (J080306J04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080306J04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 37438690 | -328 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTTCTCC | + | 37438658 | 37438665 | -360 | -353 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTCGGCCCCCACG | + | 37438460 | 37438472 | -558 | -546 | |||
OsREG642 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG613 | GCCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG536 | CCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCGTCGCGCG | + | 37438559 | 37438569 | -459 | -449 | |||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG556 | GCGTCGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG557 | GTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | GGTGGGAC | + | 37438610 | 37438617 | -408 | -401 | |||
OsREG651 | GGTGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | ACTGGGCCTGG | + | 37438634 | 37438644 | -384 | -374 | |||
OsREG454 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG524 | GGGCCTGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |