PlantPromoterDB promoter information of J080306J04
Summary of Gene (J080306J04)
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Overview
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Focused view (chromosome 1: 37434818-37436017)
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Genome position
from initiation codon TSS from cDNA TSS information J080306J04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080306J04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 37438690 | -328 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTTCTCC | + | 37438658 | 37438665 | -360 | -353 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCGGCCCCCACG | + | 37438460 | 37438472 | -558 | -546 | |||
| OsREG642 | TTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG613 | GCCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG536 | CCCCCACG | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGTCGCGCG | + | 37438559 | 37438569 | -459 | -449 | |||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG557 | GTCGCGCG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | GGTGGGAC | + | 37438610 | 37438617 | -408 | -401 | |||
| OsREG651 | GGTGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | ACTGGGCCTGG | + | 37438634 | 37438644 | -384 | -374 | |||
| OsREG454 | ACTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG513 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG524 | GGGCCTGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||