PlantPromoterDB promoter information of J080317H09
Summary of Gene (J080317H09)
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Overview
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Focused view (chromosome 2: 35978217-35979416)
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Genome position
from initiation codon 006-055-D08 006-060-D05 006-086-H02 006-091-B04 006-119-B04 009-152-H12 AK065134 AK071580 AK104103 AK104525 AK104684 AK104947 AY346465 J013001P24 J013032M22 J013056P03 J013070P08 J013106H15 J013146O03 J013170F21 J023038I01 J023049P19 J023106O04 J065053E04 J065196F01 J075026E09 J075043L03 J075049B11 J080301G04 J080305H10 J080308H05 J080311I19 J080315G02 J080315J24 J080316D10 J080317J05 J080318H15 J090047M14 J100025F05 J100039A01 J100060C16 J100064H07 J100065K23 J100075N11 J100081E01 J100085G12 TSS from cDNA TSS information J080317H09 5'->3' (+) Promoter sequence AK068163
J065169L23 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J080317H09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 35979205 | -12 |
| TSS clone peak | G | clone | + | 35979209 | -8 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATAAATG | + | 35979172 | 35979182 | -45 | -35 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGTGGGCCAG | + | 35979102 | 35979112 | -115 | -105 | |||
| OsREG599 | TGGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | GTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG577 | TGGGCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 35979217 | J013106H15, J080308H05, J080315J24, J080316D10, J013032M21, J013044P09, J053100K06, 009-184-D08 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||