PlantPromoterDB promoter information of J090030H24
Summary of Gene (J090030H24)
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Overview
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Focused view (chromosome 7: 7175778-7176977)
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Genome position
from initiation codon TSS from cDNA TSS information J090030H24 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J090030H24
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 7177705 | -923 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | + | 7177407 | 7177414 | -1221 | -1214 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
| REG | AGTGACAC | + | 7177552 | 7177559 | -1076 | -1069 | |||
| OsREG477 | AGTGACAC | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | AAAAGCCCA | + | 7177656 | 7177664 | -972 | -964 | |||
| OsREG419 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG421 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||