Summary of Gene (J090038L06)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J090038L06 5'->3' (-) Promoter sequence AK060603
AK102274 J033089C06 J090089A17 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 12851741 | -77 |
TSS clone peak | G | clone | - | 12851719 | -55 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCTC | - | 12851750 | 12851757 | -86 | -93 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTCGGATC | - | 12851797 | 12851806 | -133 | -142 | |||
OsREG546 | CCGTCGGA | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG483 | CGTCGGAT | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG588 | GTCGGATC | PPDB Motif | CCGAC  | PLACE Motif |   | ||||
REG | CCACGGCCCAAC | - | 12851856 | 12851867 | -192 | -203 | |||
OsREG521 | CCACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
REG | CTCGGCCCATTA | - | 12851897 | 12851908 | -233 | -244 | |||
OsREG575 | CTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG610 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGGCCCAATA | - | 12851910 | 12851920 | -246 | -256 | |||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG596 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |