PlantPromoterDB promoter information of J090039L03
Summary of Gene (J090039L03)
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Overview
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Focused view (chromosome 3: 35260074-35261273)
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Genome position
from initiation codon 006-093-H04 AK111912 AK112029 AY576526 AY579410 J013089F15 J033126H16 J065105B21 J075041G24 J075142L06 J075145K15 J100025G07 J100029I04 J100030A22 J100031F11 J100043N05 J100049C23 J100070N08 TSS from cDNA TSS information J090039L03 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J090039L03
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 35263573 | -151 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCTTCTCC | + | 35263568 | 35263576 | -156 | -148 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGGCCCAATT | + | 35263292 | 35263302 | -432 | -422 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CTCCCCCA | + | 35263333 | 35263340 | -391 | -384 | |||
| OsREG574 | CTCCCCCA | PPDB Motif | PLACE Motif | ||||||
| REG | CCCACTTG | + | 35263422 | 35263429 | -302 | -295 | |||
| OsREG498 | CCCACTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCGGCCCAATAGGCCCAAG | + | 35263489 | 35263507 | -235 | -217 | |||
| OsREG658 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG596 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG581 | GGCCCAAG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||