PlantPromoterDB promoter information of J090039N06
Summary of Gene (J090039N06)
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Overview
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Focused view (chromosome 3: 35451301-35450102)
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Genome position
from initiation codon AK071234 J043037N19 J065060F05 J065109J21 J065176G17 J075062C14 J075082C12 J075135D03 J075135E09 J090001A09 J090050I17 J090053L05 J090064A07 J090094M16 TSS from cDNA TSS information J090039N06 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J090039N06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 35451940 | -189 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACTCTATAAATT | - | 35451968 | 35451979 | -217 | -228 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACACACC | - | 35452030 | 35452037 | -279 | -286 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | - | 35450192 | AK058223 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATCTGGGCTTG | - | 35450395 | 35450405 | AK058223 | ||||
| OsREG486 | ATCTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG428 | CTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG496 | TGGGCTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTTGGTGGGGC | - | 35450454 | 35450464 | AK058223 | ||||
| OsREG520 | GTTGGTGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| OsREG612 | GGTGGGGC | PPDB Motif | PLACE Motif | ||||||