PlantPromoterDB promoter information of J090040H05
Summary of Gene (J090040H05)
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Overview
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Focused view (chromosome 3: 25417228-25416029)
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Genome position
from initiation codon J023022K02 J023030J24 J023062H06 J033023I12 J033023O07 J033040B18 J033041D08 J033046C22 J033052G04 J033055N17 J033068L18 J033070G21 J033071E05 J033071P14 J033072G03 J033073P10 J033076F02 J033080E23 J033089G17 J033095O20 J033103M02 J033108C06 J033109O14 J033114C01 J033121K12 J033123G23 J033124M18 J033132J15 J033140L20 J065165E15 J065217L02 J090073L17 J090091D11 TSS from cDNA TSS information J090040H05 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J090040H05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 25413987 | -309 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATGGGCTGA | - | 25414037 | 25414046 | -359 | -368 | |||
| OsREG432 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | ATGGGCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG657 | TGGGCTGA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||