PlantPromoterDB promoter information of J090070G02
Summary of Gene (J090070G02)
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Overview
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Focused view (chromosome 9: 23766604-23767803)
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Genome position
from initiation codon AK101256 J013000I23 J013027J02 J013034M08 J013037L03 J013041D10 J013042D15 J013109H17 J013132A18 J013160N13 J013169I09 J023029F18 J023041A02 J023097B14 J023142I04 J023142N06 J033023I21 J033032G15 J033042M17 J033070F09 J053063L09 J053064A09 J065073M19 J075005H11 J075026D12 J075043G07 J075084N05 J075092D05 J075110E24 J075176I05 J090009H19 J090025K11 J090049E20 TSS from cDNA TSS information J090070G02 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J090070G02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 23765697 | -257 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGTGGGCCGTGG | + | 23765558 | 23765569 | -396 | -385 | |||
| OsREG478 | AGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | GTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG521 | GGCCGTGG | PPDB Motif | PLACE Motif | ||||||
| REG | TATGGGCTTGG | + | 23765587 | 23765597 | -367 | -357 | |||
| OsREG465 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG429 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG496 | TGGGCTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG519 | GGGCTTGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||