Summary of Gene (J090072L18)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J090072L18 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 33182196 | -62 |
TSS clone peak | A | clone | + | 33182201 | -57 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCCC | + | 33182234 | 33182241 | -24 | -17 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACATGGGCCTC | + | 33182039 | 33182049 | -219 | -209 | |||
OsREG437 | ACATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGATGGGCCGAG | + | 33182069 | 33182080 | -189 | -178 | |||
OsREG456 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG575 | GGGCCGAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCTGGGCCTA | + | 33182092 | 33182101 | -166 | -157 | |||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCCG | + | 33182131 | 33182141 | -127 | -117 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | TGGGCCCG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |