Summary of Gene (J090080A22)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK061648 AK098876 J013001D18 J033070I21 J065124F13 J065218D02 J075060K03 J100032P18 TSS from cDNA TSS information J090080A22 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 34091018 | -103 |
TSS clone peak | G | clone | + | 34091083 | -38 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCTC | + | 34091084 | 34091092 | -37 | -29 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCCCACC | + | 34090846 | 34090853 | -275 | -268 | |||
OsREG651 | GTCCCACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGACCCGC | + | 34091010 | 34091017 | -111 | -104 | |||
OsREG552 | CGACCCGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCACGCGGCCCAGCCCAACC | + | 34091020 | 34091041 | -101 | -80 | |||
OsREG602 | GCCCACGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG530 | CCCACGCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | CAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG458 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG595 | GCCCAACC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |