PlantPromoterDB promoter information of J090094K13
Summary of Gene (J090094K13)
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Overview
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Focused view (chromosome 9: 15520134-15521333)
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Genome position
from initiation codon J013095G13 J013128E08 J023072N21 J023083D13 J023090E24 J023097A14 J023130H06 J033052I04 J033066K22 J033071G04 J033089J21 J033090L16 J033100P19 J033102C11 J033124H23 J033129E23 J043003I16 J090029J24 J090033P05 J090068G20 TSS from cDNA TSS information J090094K13 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J090094K13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 15521100 | -734 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAGCCCATT | + | 15520925 | 15520934 | -909 | -900 | |||
| OsREG496 | CAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG429 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCCCCCA | + | 15521032 | 15521039 | -802 | -795 | |||
| OsREG438 | ACCCCCCA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||