PlantPromoterDB promoter information of J100025D15
Summary of Gene (J100025D15)
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Overview
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Focused view (chromosome 1: 36282902-36284101)
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Genome position
from initiation codon TSS from cDNA TSS information J100025D15 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J100025D15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 36287621 | -681 |
| TSS clone peak | G | clone | + | 36287623 | -679 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAAAACGCACGCG | + | 36287459 | 36287474 | -843 | -828 | |||
| OsREG592 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG555 | CGCACGCG | PPDB Motif | PLACE Motif | ||||||
| REG | GGTGGGGCCCACCT | + | 36287500 | 36287513 | -802 | -789 | |||
| OsREG612 | GGTGGGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG631 | GTGGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG641 | TGGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | GGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||