Summary of Gene (J100025D15)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J100025D15 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 36287621 | -681 |
TSS clone peak | G | clone | + | 36287623 | -679 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCAAAACGCACGCG | + | 36287459 | 36287474 | -843 | -828 | |||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG555 | CGCACGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGGGGCCCACCT | + | 36287500 | 36287513 | -802 | -789 | |||
OsREG612 | GGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |