Summary of Gene (J100029C06)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-156-D02 AK058663 AK099476 J065084G15 J075046C12 J075058D24 J075151M03 J075151M04 J075153I20 J075167J05 J075179G06 J100025I19 J100025L21 J100068E24 J100070F10 J100083H23 J100089H10 TSS from cDNA TSS information J100029C06 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 11144237 | -94 |
TSS clone peak | G | clone | + | 11144239 | -92 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTATAAATG | + | 11144203 | 11144212 | -128 | -119 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGCGCG | + | 11144013 | 11144020 | -318 | -311 | |||
OsREG557 | GTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AGCCCACCAAC | + | 11144049 | 11144059 | -282 | -272 | |||
OsREG462 | AGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CACGTGGGCCAC | + | 11144100 | 11144111 | -231 | -220 | |||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG653 | TGGGCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCCCGGA | + | 11144175 | 11144182 | -156 | -149 | |||
OsREG633 | GGCCCGGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |