Summary of Gene (J100045B16)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK063789 AK121702 J033073H17 J065006A02 J065009C05 J065028M04 J065070D07 J065072H17 J065114J23 J065127A02 J065146L07 J065213H17 J065214B07 TSS from cDNA TSS information J100045B16 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 16109041 | -76 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTCTATAT | + | 16109008 | 16109016 | -109 | -101 |
Y Patch | CTTCCTCT | + | 16109005 | 16109012 | -112 | -105 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCCACGTC | + | 16108773 | 16108781 | -344 | -336 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | ATTTGGGCCGA | + | 16108954 | 16108964 | -163 | -153 | |||
OsREG493 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTCGGCCCATA | + | 16108968 | 16108978 | -149 | -139 | |||
OsREG642 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCGGCCC | + | 16108991 | 16108998 | -126 | -119 | |||
OsREG615 | GCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |