PlantPromoterDB promoter information of J100058N16
Summary of Gene (J100058N16)
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Overview
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Focused view (chromosome 12: 27282199-27283398)
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Genome position
from initiation codon TSS from cDNA TSS information J100058N16 5'->3' (+) Promoter sequence 011-008-D01
AK063915 AK067318 AK103431 J100023I20 J100052F04 J100060K20 J100061G10 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J100058N16
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 27286691 | -108 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGGCTATAAATC | + | 27286653 | 27286664 | -146 | -135 |
| Y Patch | TCTTCCCC | + | 27286683 | 27286690 | -116 | -109 |
| Y Patch | TTCTCCTCCCCCTCCC | + | 27286715 | 27286730 | -84 | -69 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCCCCCACCGTCGGAT | + | 27286605 | 27286621 | -194 | -178 | |||
| OsREG438 | ACCCCCCA | PPDB Motif | PLACE Motif | ||||||
| OsREG546 | CCGTCGGA | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| OsREG483 | CGTCGGAT | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| REG | GGACGGCC | + | 27286629 | 27286636 | -170 | -163 | |||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 27283395 | AK063915, 011-008-D01, AK063915, J100060K20, J100061G10, J100023I20, AK103431, J100052F04 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||