Summary of Gene (J100071P19)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J100071P19 5'->3' (+) Promoter sequence AB071014
AB100696 AK067839 AK100998 J013089O09 J013126J24 J013146L16 J013160D06 J065061I21 J090065C23 J090067N19 J090070E11 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 29678164 | -32 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTCGGCCCAGC | + | 29678028 | 29678038 | -168 | -158 | |||
OsREG575 | CTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 29676795 | AB100696, J090067N19, AK100998, AB100696, J013089O09, J013126J24, AK067839, J090070E11, J013160D06, J013146L16, AB071014 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTCGCGTC | - | 29676959 | 29676966 | AB071014, AB100696, AK067839, AK100998, J013089O09, J013126J24, J013146L16, J013160D06, J090067N19, J090070E11 | ||||
OsREG583 | GTCGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCAAAC | - | 29677039 | 29677046 | AB071014, AB100696, AK067839, AK100998, J013089O09, J013126J24, J013146L16, J013160D06, J090067N19, J090070E11 | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTGGCCCAAC | - | 29677060 | 29677069 | AB071014, AB100696, AK067839, AK100998, J013089O09, J013126J24, J013146L16, J013160D06, J090067N19, J090070E11 | ||||
OsREG660 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   |