PlantPromoterDB promoter information of J100071P19
Summary of Gene (J100071P19)
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Overview
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Focused view (chromosome 1: 29677546-29678745)
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Genome position
from initiation codon AK063019 AK071536 AK120629 J013045E23 J013153D21 J013157A14 J023048M04 J065006P11 J065042O14 J065080D15 J065096M02 J065109M14 J065204H02 J065207L21 J075028D22 J075040O12 J075051O03 J075071M13 J075151H15 J075153D16 J075153I21 J080311L16 J090039J19 J100053A20 TSS from cDNA TSS information J100071P19 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J100071P19
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 29678164 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTCGGCCCAGC | + | 29678028 | 29678038 | -168 | -158 | |||
| OsREG575 | CTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG565 | CGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG620 | GGCCCAGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | + | 29678376 | AK071536 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTCTCTCTCTCTCCTC | + | 29678350 | 29678370 | AK071536 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGCACCGC | + | 29678184 | 29678191 | AK071536 | ||||
| OsREG554 | CGCACCGC | PPDB Motif | PLACE Motif | ||||||
| REG | CTCTCCGC | + | 29678235 | 29678242 | AK071536 | ||||
| OsREG576 | CTCTCCGC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCCCGCG | + | 29678254 | 29678261 | AK071536 | ||||
| OsREG537 | CCCCCGCG | PPDB Motif | PLACE Motif | ||||||
| REG | GCGGGCCCGC | + | 29678303 | 29678312 | AK071536 | ||||
| OsREG619 | GCGGGCCCGC | PPDB Motif | GCCCA | PLACE Motif | |||||