Summary of Gene (J100075D01)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J033022E04 J033051I24 J065104A15 TSS from cDNA TSS information J100075D01 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 2356371 | -161 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAGGCCCAGGCCCAGGCCCGGCCC | - | 2356427 | 2356451 | -217 | -241 | |||
OsREG524 | CCAGGCCCAGGCCCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | CAGGCCCAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG550 | GGCCCAGGCCCAGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAGCCCAG | - | 2356454 | 2356463 | -244 | -253 | |||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG512 | CAGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAACGGCCCATT | - | 2356484 | 2356495 | -274 | -285 | |||
OsREG494 | CAACGGCC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG423 | AACGGCCC | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGACACGT | - | 2356569 | 2356576 | -359 | -366 | |||
OsREG451 | GGACACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | GAAGCCCATCT | - | 2356625 | 2356635 | -415 | -425 | |||
OsREG582 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | AGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATCCCCCA | - | 2356645 | 2356652 | -435 | -442 | |||
OsREG482 | ATCCCCCA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 2363058 | AK073102, J033051I24, AK073102 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCCCGCA | - | 2363111 | 2363118 | AK073102, J033051I24 | ||||
OsREG632 | GGCCCGCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAACGGCCCGTT | - | 2363126 | 2363137 | AK073102, J033051I24 | ||||
OsREG420 | AAACGGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
OsREG423 | AACGGCCC | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG424 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG  | PLACE Motif |   | ||||
REG | TTGTGGGCCTC | - | 2363140 | 2363150 | AK073102, J033051I24 | ||||
OsREG597 | TTGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGGACCCG | - | 2363262 | 2363272 | AK073102, J033051I24 | ||||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   |