Summary of Gene (J100079K13)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J100079K13 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 27286691 | -108 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CGGCTATAAATC | + | 27286653 | 27286664 | -146 | -135 |
Y Patch | TCTTCCCC | + | 27286683 | 27286690 | -116 | -109 |
Y Patch | TTCTCCTCCCCCTCCC | + | 27286715 | 27286730 | -84 | -69 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCCCCCACCGTCGGAT | + | 27286605 | 27286621 | -194 | -178 | |||
OsREG438 | ACCCCCCA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG546 | CCGTCGGA | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG483 | CGTCGGAT | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
REG | GGACGGCC | + | 27286629 | 27286636 | -170 | -163 | |||
OsREG624 | GGACGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |