PlantPromoterDB promoter information of J100079K13
Summary of Gene (J100079K13)
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Overview
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Focused view (chromosome 12: 27286049-27287248)
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Genome position
from initiation codon AJ002893 J065001J09 J065002D04 J065041I19 J065051I02 J065054G12 J065061A03 J065061B03 J065062D24 J065079O14 J065083P21 J065098H21 J065101F01 J065102M05 J065121E24 J065138P03 J065161B22 J065163E13 J065165D14 J065169J17 J065191B15 J065197C23 J075002C02 J075003D03 J075003M01 J075011J11 J075013I09 J075013P21 J075020D15 J075020L10 J075025P14 J075031G13 J075044J01 J075048K03 J075081H02 J075081M24 J075093H13 J075096I02 J075096K17 J075097I08 J075097L19 J075098K03 J075099L15 J075118E23 J075118H23 J075118J24 J075127N03 J075142H14 J075146D17 J075156K21 J080016A22 J080016B03 J080040H01 J080068A22 J080068G23 J080071M07 J080072C22 J080092L23 J080094M23 J080094P05 J080304H19 J090045K01 J090051E23 J090084I02 J100024B13 J100024H16 J100025F08 J100026C20 J100026J20 J100026J24 J100026K14 J100026M15 J100027A21 J100027C08 J100027D04 J100027F17 J100027G08 J100027H22 J100027N15 J100028F01 J100028J11 J100029B19 J100029C17 J100029K13 J100029N17 J100030A16 J100030F13 J100030M17 J100030N04 J100030N09 J100031F16 J100031I07 J100031K06 J100031K09 J100032E01 J100032F13 J100032I20 J100032N21 J100032O06 J100033E08 J100033M19 J100033M22 J100034B22 J100034H08 J100034K22 J100034N04 J100034P17 J100035K22 J100035L11 J100035N24 J100036L18 J100037B01 J100037F04 J100037H23 J100037L18 J100038B05 J100038F13 J100038K04 J100039G20 J100040G09 J100041A11 J100041B22 J100041K06 J100041O09 J100042A20 J100042C07 J100042I02 J100042K03 J100043C18 J100043D20 J100043F08 J100043G23 J100043H22 J100043I23 J100043K11 J100043P03 J100044C01 J100044F02 J100044L10 J100045A13 J100045D16 J100045D23 J100045F09 J100045H22 J100045O07 J100046J15 J100046K14 J100046L15 J100047L23 J100047P05 J100048A20 J100048C22 J100048G17 J100048J20 J100048K18 J100048L22 J100048O22 J100049F18 J100049M03 J100050C20 J100050G14 J100050O10 J100051E09 J100051F20 J100051I22 J100051J11 J100051J17 J100052A04 J100052E01 J100052E13 J100054A10 J100054B08 J100054B12 J100054F05 J100054I16 J100054L18 J100055A03 J100055K11 J100056I06 J100056I16 J100056M20 J100057D04 J100057E15 J100057G07 J100057H22 J100058H07 J100058M11 J100058M20 J100058N04 J100058N16 J100058O11 J100059A20 J100059E05 J100059K17 J100059M07 J100060A07 J100060G24 J100060I15 J100060M15 J100060M20 J100060N23 J100061H20 J100062C04 J100062C22 J100062F20 J100062G08 J100062H17 J100062I05 J100062L21 J100062O04 J100063B10 J100063C01 J100063D11 J100064B18 J100064G01 J100064K07 J100064L09 J100064M13 J100064O10 J100065J24 J100065N15 J100066E13 J100066G16 J100066J03 J100066K06 J100066P15 J100067D12 J100067G04 J100067G18 J100067I18 J100067K04 J100068C21 J100068D08 J100068G17 J100068H09 J100069F05 J100069I20 J100069J05 J100070D16 J100070I09 J100070K06 J100071G09 J100071H20 J100071K07 J100071L03 J100071L13 J100072A11 J100072C19 J100072E13 J100072E16 J100072M06 J100072O10 J100073E05 J100073L14 J100073N05 J100074I04 J100074K21 J100074L22 J100074N07 J100075F18 J100075H14 J100075I03 J100075K02 J100075K11 J100075K16 J100075N08 J100076A03 J100076C05 J100076I24 J100077H07 J100077P09 J100078C15 J100078J15 J100078K02 J100078K23 J100078M11 J100079E21 J100079F03 J100081L17 J100081P09 J100082D14 J100083E07 J100083H07 J100084B12 J100084C20 J100084D21 J100084L21 J100085I10 J100085L22 J100085M20 J100086G15 J100086N03 J100087E11 J100087I01 J100088C17 J100088N20 J100089I18 J100089M13 J100090E17 J100090J19 TSS from cDNA TSS information J100079K13 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J100079K13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 27286691 | -108 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGGCTATAAATC | + | 27286653 | 27286664 | -146 | -135 |
| Y Patch | TCTTCCCC | + | 27286683 | 27286690 | -116 | -109 |
| Y Patch | TTCTCCTCCCCCTCCC | + | 27286715 | 27286730 | -84 | -69 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCCCCCACCGTCGGAT | + | 27286605 | 27286621 | -194 | -178 | |||
| OsREG438 | ACCCCCCA | PPDB Motif | PLACE Motif | ||||||
| OsREG546 | CCGTCGGA | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| OsREG483 | CGTCGGAT | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| REG | GGACGGCC | + | 27286629 | 27286636 | -170 | -163 | |||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | + | 27287097 | J080016B03, J080071M07 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCTGGGCCAC | + | 27286845 | 27286854 | J080016B03, J080071M07 | ||||
| OsREG550 | CCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG578 | CTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG653 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||