PlantPromoterDB promoter information of J100081M23
Summary of Gene (J100081M23)
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Overview
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Focused view (chromosome 4: 14503992-14502793)
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Genome position
from initiation codon AY576676 J100043J22 J100049F15 TSS from cDNA TSS information J100081M23 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J100081M23
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 14504875 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTCCTATATATATA | - | 14504899 | 14504912 | -57 | -70 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCAGCCCAAAA | - | 14504931 | 14504941 | -89 | -99 | |||
| OsREG591 | GCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG511 | CAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG457 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG592 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCGAGAT | - | 14504996 | 14505003 | -154 | -161 | |||
| OsREG485 | GCCGAGAT | PPDB Motif | PLACE Motif | ||||||
| REG | GGTGTGTG | - | 14505079 | 14505086 | -237 | -244 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||