Summary of Gene (J100081M23)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AY576676 J100043J22 J100049F15 TSS from cDNA TSS information J100081M23 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 14504875 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTCCTATATATATA | - | 14504899 | 14504912 | -57 | -70 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCAGCCCAAAA | - | 14504931 | 14504941 | -89 | -99 | |||
OsREG591 | GCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | CAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG457 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCGAGAT | - | 14504996 | 14505003 | -154 | -161 | |||
OsREG485 | GCCGAGAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGTGTG | - | 14505079 | 14505086 | -237 | -244 | |||
OsREG499 | GGTGTGTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |