PlantPromoterDB promoter information of J100085E04
Summary of Gene (J100085E04)
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Overview
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Focused view (chromosome 9: 11087618-11086419)
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Genome position
from initiation codon J033076F19 TSS from cDNA TSS information J100085E04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J100085E04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 11087374 | -556 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTC | - | 11087394 | 11087401 | -576 | -583 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGTGG | - | 11087414 | 11087421 | -596 | -603 | |||
| OsREG521 | GGCCGTGG | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCCACG | - | 11087489 | 11087496 | -671 | -678 | |||
| OsREG572 | GCCCCACG | PPDB Motif | PLACE Motif | ||||||
| REG | GCAGCCCATTT | - | 11087573 | 11087583 | -755 | -765 | |||
| OsREG591 | GCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | CAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG422 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||