Summary of Gene (J100088F12)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J100088F12 5'->3' (+) Promoter sequence 009-171-F12
AB111915 AK058837 J065009D06 J065056K18 J065073B17 J065073H13 J065090I06 J065123N02 J075124D17 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 8393433 | -66 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCCC | + | 8393407 | 8393414 | -92 | -85 |
Y Patch | CCTTCCCTTCCCT | + | 8393466 | 8393478 | -33 | -21 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGGCCCCACGT | + | 8393341 | 8393352 | -158 | -147 | |||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG450 | CCCCACGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | TCTGGGCCCACGA | + | 8393364 | 8393376 | -135 | -123 | |||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG579 | CTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | GGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG601 | GCCCACGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTCGCGCGC | + | 8393383 | 8393391 | -116 | -108 | |||
OsREG558 | CTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
OsREG617 | TCGCGCGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |