PlantPromoterDB promoter information of J100088H21
Summary of Gene (J100088H21)
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Overview
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Focused view (chromosome 6: 29360303-29361502)
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Genome position
from initiation codon 009-060-B06 013-057-F12 AK111852 AK111897 AK112082 J065104C07 J065187J11 J065197L08 J100045K14 J100074M08 TSS from cDNA TSS information J100088H21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J100088H21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 29360814 | -89 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTCCTCCCCT | + | 29360766 | 29360779 | -137 | -124 |
| Y Patch | CCTCCTCCCC | + | 29360791 | 29360800 | -112 | -103 |
| Y Patch | TCCCTCTCCTCTTCTCCTCCTCTC | + | 29360815 | 29360838 | -88 | -65 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACGCGAC | + | 29360558 | 29360565 | -345 | -338 | |||
| OsREG583 | GACGCGAC | PPDB Motif | PLACE Motif | ||||||
| REG | CCAGCCCACGCCCAACT | + | 29360607 | 29360623 | -296 | -280 | |||
| OsREG523 | CCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG463 | AGCCCACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG602 | GCCCACGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG479 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCACACG | + | 29360705 | 29360712 | -198 | -191 | |||
| OsREG526 | CCCACACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CATCCACC | + | 29360726 | 29360733 | -177 | -170 | |||
| OsREG515 | CATCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | GAAGCCCACCAC | + | 29360755 | 29360766 | -148 | -137 | |||
| OsREG582 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG427 | AAGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG462 | AGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||