Summary of Gene (Os07g0611800)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information Os07g0611800 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 25855746 | -977 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCC | + | 25855730 | 25855737 | -993 | -986 |
Y Patch | CTCTCCTC | + | 25855783 | 25855790 | -940 | -933 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GAAGCCCATACTGGCCCAATT | + | 25855514 | 25855534 | -1209 | -1189 | |||
OsREG582 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG465 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG606 | GCCCATAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCGTGCGCACGGCCCATG | + | 25855538 | 25855556 | -1185 | -1167 | |||
OsREG555 | CGCGTGCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | CCCACTCC | + | 25855682 | 25855689 | -1041 | -1034 | |||
OsREG532 | CCCACTCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |