Summary of Gene (U27350)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK101594 AK119500 J033051F01 J090058D14 J100037N18 J100042J23 J100053E20 J100060G07 TSS from cDNA TSS information U27350 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 10271411 | -170 |
TSS clone peak | A | clone | - | 10271401 | -160 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GGTATAAAAC | - | 10271435 | 10271444 | -194 | -203 |
Y Patch | TTCCTCCCC | - | 10271418 | 10271426 | -177 | -185 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTCCCCCA | - | 10271543 | 10271550 | -302 | -309 | |||
OsREG574 | CTCCCCCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCCACC | - | 10271591 | 10271598 | -350 | -357 | |||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCGGGCCCCA | - | 10271608 | 10271617 | -367 | -376 | |||
OsREG619 | GCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCACCGCAC | - | 10271699 | 10271708 | -458 | -467 | |||
OsREG554 | CGCACCGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG500 | CACCGCAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |