PlantPromoterDB promoter information of U27350
Summary of Gene (U27350)
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Overview
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Focused view (chromosome 3: 10272241-10271042)
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Genome position
from initiation codon AK101594 AK119500 J033051F01 J090058D14 J100037N18 J100042J23 J100053E20 J100060G07 TSS from cDNA TSS information U27350 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of U27350
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 10271411 | -170 |
| TSS clone peak | A | clone | - | 10271401 | -160 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGTATAAAAC | - | 10271435 | 10271444 | -194 | -203 |
| Y Patch | TTCCTCCCC | - | 10271418 | 10271426 | -177 | -185 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTCCCCCA | - | 10271543 | 10271550 | -302 | -309 | |||
| OsREG574 | CTCCCCCA | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCCACC | - | 10271591 | 10271598 | -350 | -357 | |||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | GCGGGCCCCA | - | 10271608 | 10271617 | -367 | -376 | |||
| OsREG619 | GCGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCACCGCAC | - | 10271699 | 10271708 | -458 | -467 | |||
| OsREG554 | CGCACCGC | PPDB Motif | PLACE Motif | ||||||
| OsREG500 | CACCGCAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||