version

Summary of This Tissue Information (All List)

Organism Arabidopsis thaliana
Tissue Flower
Total Entry Count 186

Entry Genes (186 entries)

LocusGene modelDescription
AT1G01370
(UniProt:HTR12_ARATH)
AT1G01370.1Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. 

(UniProt:HTR12_ARATH)
AT1G01370.2Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. 
AT1G02010
(UniProt:SEC1A_ARATH)
AT1G02010.1member of KEULE Gene Family 
AT1G02065
(UniProt:SPL8_ARATH)
AT1G02065.1Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation. 

(UniProt:SPL8_ARATH)
AT1G02065.2Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation. 
AT1G06170
(UniProt:BH089_ARATH)
AT1G06170.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 

(UniProt:BH089_ARATH)
AT1G06170.2basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
AT1G09210
(UniProt:CALR2_ARATH)
AT1G09210.1calreticulin 2 (CRT2); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding (TAIR:AT1G56340.2); Has 6897 Blast hits to 3331 proteins in 371 species: Archae - 6; Bacteria - 265; Metazoa - 3811; Fungi - 490; Plants - 317; Viruses - 187; Other Eukaryotes - 1821 (source: NCBI BLink). 
AT1G12360
(UniProt:KEULE_ARATH)
AT1G12360.1encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis. 
AT1G12920
(UniProt:ERF1Y_ARATH)
AT1G12920.1Encodes a eukaryotic release factor one homolog. 
AT1G13960
(UniProt:WRKY4_ARATH)
AT1G13960.1Encodes WRKY DNA-binding protein 4 (WRKY4). 

(UniProt:WRKY4_ARATH)
AT1G13960.2Encodes WRKY DNA-binding protein 4 (WRKY4). 
AT1G18860
(UniProt:WRK61_ARATH)
AT1G18860.1member of WRKY Transcription Factor; Group II-b 
AT1G20980
(UniProt:SPL14_ARATH)
AT1G20980.1Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. 
AT1G22920
(UniProt:CSN5B_ARATH)
AT1G22920.1AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. 

(UniProt:CSN5B_ARATH)
AT1G22920.2AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. 
AT1G27360
(UniProt:SPL11_ARATH)
AT1G27360.1squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL11_ARATH)
AT1G27360.2squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL11_ARATH)
AT1G27360.3squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL11_ARATH)
AT1G27360.4squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT1G27370
(UniProt:SPL10_ARATH)
AT1G27370.1squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL10_ARATH)
AT1G27370.2squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL10_ARATH)
AT1G27370.3squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:SPL10_ARATH)
AT1G27370.4squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT1G29280
(UniProt:WRK65_ARATH)
AT1G29280.1member of WRKY Transcription Factor; Group II-e 
AT1G29860
(UniProt:WRK71_ARATH)
AT1G29860.1member of WRKY Transcription Factor; Group II-c 
AT1G30650
(UniProt:WRK14_ARATH)
AT1G30650.1member of WRKY Transcription Factor; Group II-e 
AT1G35460
(UniProt:BH080_ARATH)
AT1G35460.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G09180.1); Has 1117 Blast hits to 1117 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT1G49770
(UniProt:BH095_ARATH)
AT1G49770.1Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to dessication due to the abnormal cuticle. 
AT1G50310
(UniProt:STP9_ARATH)
AT1G50310.1SUGAR TRANSPORTER 9 (STP9); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G19940.1); Has 19582 Blast hits to 19239 proteins in 1239 species: Archae - 281; Bacteria - 8248; Metazoa - 3956; Fungi - 4600; Plants - 1344; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink). 
AT1G53160
(UniProt:SPL4_ARATH)
AT1G53160.1Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. 

(UniProt:SPL4_ARATH)
AT1G53160.2Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. 
AT1G55600
(UniProt:WRK10_ARATH)
AT1G55600.1member of WRKY Transcription Factor; Group I. It has WRKY domain at its N terminal end and zinc-finger like motif. 
AT1G63990
(UniProt:SPO12_ARATH)
AT1G63990.1Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction. 

(UniProt:SPO12_ARATH)
AT1G63990.1Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction. 
AT1G64000
(UniProt:WRK56_ARATH)
AT1G64000.1member of WRKY Transcription Factor; Group II-c 
AT1G66550
(UniProt:WRK67_ARATH)
AT1G66550.1member of WRKY Transcription Factor; Group III 

(UniProt:WRK67_ARATH)
AT1G66550.2member of WRKY Transcription Factor; Group III 
AT1G66560
(UniProt:WRK64_ARATH)
AT1G66560.1member of WRKY Transcription Factor; Group III 
AT1G66600
(UniProt:WRK63_ARATH)
AT1G66600.1member of WRKY Transcription Factor; Group III 
AT1G68150
(UniProt:WRKY9_ARATH)
AT1G68150.1member of WRKY Transcription Factor; Group II-b 
AT1G69010
(UniProt:BIM2_ARATH)
AT1G69010.1BES1-interacting Myc-like protein 2 (BIM2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM1; DNA binding / protein binding / transcription factor (TAIR:AT5G08130.3); Has 1614 Blast hits to 1609 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 38; Plants - 1371; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 
AT1G69170
(UniProt:SPL6_ARATH)
AT1G69170.1squamosa promoter-binding protein-like 6 (SPL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor (TAIR:AT5G43270.3); Has 527 Blast hits to 527 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT1G69270
(UniProt:Q9ZRF9_ARATH)
AT1G69270.1RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. 
AT1G69310
(UniProt:WRK57_ARATH)
AT1G69310.1member of WRKY Transcription Factor; Group II-c 

(UniProt:WRK57_ARATH)
AT1G69310.2member of WRKY Transcription Factor; Group II-c 
AT1G69810
(UniProt:WRK36_ARATH)
AT1G69810.1member of WRKY Transcription Factor; Group II-b 
AT1G75040
(UniProt:PR5_ARATH)
AT1G75040.1Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. 
AT1G76420
(UniProt:NAC31_ARATH)
AT1G76420.1Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. 
AT1G76580
(UniProt:SPL16_ARATH)
AT1G76580.1transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL14 (squamosa promoter binding protein-like 14); DNA binding / transcription activator/ transcription factor (TAIR:AT1G20980.1); Has 3182 Blast hits to 365 proteins in 89 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 100; Plants - 98; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink). 
AT2G02860
(UniProt:SUC3_ARATH)
AT2G02860.1encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. 

(UniProt:SUC3_ARATH)
AT2G02860.2encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. 
AT2G04880
(UniProt:WRKY1_ARATH)
AT2G04880.1Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. 

(UniProt:WRKY1_ARATH)
AT2G04880.2Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. 
AT2G17950
(UniProt:WUS_ARATH)
AT2G17950.1Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of the WUS expression domain controls the size of the stem cell population through WUS indirectly activating the expression of CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif. 
AT2G18300
(UniProt:BH064_ARATH)
AT2G18300.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (TAIR:AT4G36540.1); Has 1167 Blast hits to 1167 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 32; Plants - 1058; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 

(UniProt:BH064_ARATH)
AT2G18300.2basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (TAIR:AT4G36540.1); Has 1167 Blast hits to 1167 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 32; Plants - 1058; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 
AT2G21900
(UniProt:WRK59_ARATH)
AT2G21900.1member of WRKY Transcription Factor; Group II-c 
AT2G23380
(UniProt:CLF_ARATH)
AT2G23380.1Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant. 
AT2G23800
(UniProt:GGPP2_ARATH)
AT2G23800.1encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase 
AT2G24570
(UniProt:WRK17_ARATH)
AT2G24570.1member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. 
AT2G25000
(UniProt:WRK60_ARATH)
AT2G25000.1Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. 
AT2G30250
(UniProt:WRK25_ARATH)
AT2G30250.1member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. 
AT2G31210
(UniProt:BH091_ARATH)
AT2G31210.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 1126 Blast hits to 1114 proteins in 109 species: Archae - 2; Bacteria - 0; Metazoa - 13; Fungi - 10; Plants - 895; Viruses - 5; Other Eukaryotes - 201 (source: NCBI BLink). 
AT2G33810
(UniProt:SPL3_ARATH)
AT2G33810.1Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. 

(UniProt:SPL3_ARATH)
AT2G33810.1Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. 
AT2G34830
(UniProt:WRK35_ARATH)
AT2G34830.1member of WRKY Transcription Factor; Group II-e 
AT2G37260
(UniProt:WRK44_ARATH)
AT2G37260.1Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. 

(UniProt:WRK44_ARATH)
AT2G37260.2Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. 
AT2G38470
(UniProt:WRK33_ARATH)
AT2G38470.1Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. 
AT2G40750
(UniProt:WRK54_ARATH)
AT2G40750.1member of WRKY Transcription Factor; Group III 
AT2G40930
(UniProt:UBP5_ARATH)
AT2G40930.1Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. 
AT2G42200
(UniProt:SPL9_ARATH)
AT2G42200.1Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. 
AT2G42300
(UniProt:BH048_ARATH)
AT2G42300.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G57800.2); Has 1141 Blast hits to 1141 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 1128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:BH048_ARATH)
AT2G42300.2basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G57800.2); Has 1141 Blast hits to 1141 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 1128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT2G44745
(UniProt:WRK12_ARATH)
AT2G44745.1WRKY family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY13; transcription factor (TAIR:AT4G39410.1); Has 2021 Blast hits to 1730 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2003; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 
AT2G46130
(UniProt:WRK43_ARATH)
AT2G46130.1member of WRKY Transcription Factor; Group II-c 

(UniProt:WRK43_ARATH)
AT2G46130.2member of WRKY Transcription Factor; Group II-c 
AT2G46400
(UniProt:WRK46_ARATH)
AT2G46400.1member of WRKY Transcription Factor; Group III 
AT2G47030
(UniProt:PME4_ARATH)
AT2G47030.1VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase (TAIR:AT2G47040.1); Has 1439 Blast hits to 1399 proteins in 267 species: Archae - 0; Bacteria - 422; Metazoa - 1; Fungi - 130; Plants - 885; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 
AT2G47070
(UniProt:SPL1_ARATH)
AT2G47070.1member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. 
AT2G47260
(UniProt:WRK23_ARATH)
AT2G47260.1member of WRKY Transcription Factor; Group I 
AT3G01080
(UniProt:WRK58_ARATH)
AT3G01080.1member of WRKY Transcription Factor; Group I 
AT3G01970
(UniProt:WRK45_ARATH)
AT3G01970.1member of WRKY Transcription Factor; Group I 
AT3G04400
(UniProt:RL23_ARATH)
AT3G04400.1embryo defective 2171 (emb2171); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L23 (RPL23B) (TAIR:AT2G33370.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink). 
AT3G04670
(UniProt:Q2V3Y7_ARATH)
AT3G04670.1member of WRKY Transcription Factor; Group II-d 

(UniProt:Q2V3Y7_ARATH)
AT3G04670.2member of WRKY Transcription Factor; Group II-d 
AT3G05960
(UniProt:STP6_ARATH)
AT3G05960.1Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination. 
AT3G06120
(UniProt:MUTE_ARATH)
AT3G06120.1Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata. 
AT3G11980
(UniProt:FACR2_ARATH)
AT3G11980.1Similar to fatty acid reductases. 
AT3G13170
(UniProt:SPO11_ARATH)
AT3G13170.1Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. 

(UniProt:SPO11_ARATH)
AT3G13170.1Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. 
AT3G14550
(UniProt:GGPP3_ARATH)
AT3G14550.1Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. 
AT3G15270
(UniProt:SPL5_ARATH)
AT3G15270.1Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. 
AT3G20740
(UniProt:FIE_ARATH)
AT3G20740.1Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization. 
AT3G21330
(UniProt:BH087_ARATH)
AT3G21330.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC2 (HECATE 2); DNA binding / transcription factor (TAIR:AT3G50330.1); Has 1545 Blast hits to 1544 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 5; Plants - 1536; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
AT3G23210
(UniProt:BH034_ARATH)
AT3G23210.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G14410.1); Has 430 Blast hits to 428 proteins in 55 species: Archae - 2; Bacteria - 9; Metazoa - 31; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 
AT3G24140
(UniProt:FAMA_ARATH)
AT3G24140.1Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. 
AT3G56400
(UniProt:WRK70_ARATH)
AT3G56400.1member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. 
AT3G57800
(UniProt:BH060_ARATH)
AT3G57800.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G42300.1); Has 704 Blast hits to 701 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 4; Plants - 692; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 

(UniProt:BH060_ARATH)
AT3G57800.2basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G42300.1); Has 704 Blast hits to 701 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 4; Plants - 692; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT3G58710
(UniProt:WRK69_ARATH)
AT3G58710.1member of WRKY Transcription Factor; Group II-e 

(UniProt:WRK69_ARATH)
AT3G58710.2member of WRKY Transcription Factor; Group II-e 
AT3G59760
(UniProt:CYSKM_ARATH)
AT3G59760.1Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC 

(UniProt:CYSKM_ARATH)
AT3G59760.2Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC 

(UniProt:CYSKM_ARATH)
AT3G59760.3Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC 
AT3G60030
(UniProt:SPL12_ARATH)
AT3G60030.1squamosa promoter-binding protein-like 12 (SPL12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor (TAIR:AT2G47070.1); Has 614 Blast hits to 578 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 587; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 
AT3G61120
(UniProt:AGL13_ARATH)
AT3G61120.1AGAMOUS-LIKE 13 (AGL13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor (TAIR:AT2G45650.1); Has 5193 Blast hits to 5189 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 210; Plants - 4372; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). 
AT3G61510
(UniProt:1A11_ARATH)
AT3G61510.1Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity. 
AT3G62340
(UniProt:WRK68_ARATH)
AT3G62340.1member of WRKY Transcription Factor; Group II-c 
AT4G00050
(UniProt:UNE10_ARATH)
AT4G00050.1unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G61270.1); Has 2238 Blast hits to 2238 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 36; Plants - 1869; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 
AT4G01250
(UniProt:WRK22_ARATH)
AT4G01250.1member of WRKY Transcription Factor; Group II-e 
AT4G01720
(UniProt:WRK47_ARATH)
AT4G01720.1member of WRKY Transcription Factor; Group II-b 
AT4G03210
(UniProt:XTH9_ARATH)
AT4G03210.1encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. 

(UniProt:XTH9_ARATH)
AT4G03210.2encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. 
AT4G04450
(UniProt:WRK42_ARATH)
AT4G04450.1member of WRKY Transcription Factor; Group II-b 
AT4G09320
(UniProt:NDK1_ARATH)
AT4G09320.1nucleoside diphosphate kinase type 1 (NDPK1) gene, complete 
AT4G09960
(UniProt:AGL11_ARATH)
AT4G09960.1a MADS box transcription factor expressed in the carpel and ovules 

(UniProt:AGL11_ARATH)
AT4G09960.2a MADS box transcription factor expressed in the carpel and ovules 

(UniProt:AGL11_ARATH)
AT4G09960.3a MADS box transcription factor expressed in the carpel and ovules 
AT4G11070
(UniProt:WRK41_ARATH)
AT4G11070.1member of WRKY Transcription Factor; Group III 

(UniProt:WRK41_ARATH)
AT4G11070.2member of WRKY Transcription Factor; Group III 
AT4G11720
(UniProt:Q1AP31_ARATH)
AT4G11720.1Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane. 
AT4G13850
(UniProt:GRP2_ARATH)
AT4G13850.1Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. 

(UniProt:GRP2_ARATH)
AT4G13850.2Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. 

(UniProt:GRP2_ARATH)
AT4G13850.3Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. 

(UniProt:GRP2_ARATH)
AT4G13850.4Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. 
AT4G18170
(UniProt:WRK28_ARATH)
AT4G18170.1member of WRKY Transcription Factor; Group II-c 
AT4G22070
(UniProt:WRK31_ARATH)
AT4G22070.1member of WRKY Transcription Factor; Group II-b 
AT4G23550
(UniProt:WRK29_ARATH)
AT4G23550.1Encodes WRKY DNA-binding protein 29 (WRKY29). 
AT4G26440
(UniProt:WRK34_ARATH)
AT4G26440.1member of WRKY Transcription Factor; Group I 
AT4G26640
(UniProt:WRK20_ARATH)
AT4G26640.1member of WRKY Transcription Factor; Group I 

(UniProt:WRK20_ARATH)
AT4G26640.2member of WRKY Transcription Factor; Group I 
AT4G27780
(UniProt:ACBP2_ARATH)
AT4G27780.1Encodes acyl-CoA-binding protein with ankyrin repeats 
AT4G29350
(UniProt:PROF2_ARATH)
AT4G29350.1Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. 
AT4G30980
(UniProt:BH069_ARATH)
AT4G30980.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G24260.1); Has 1879 Blast hits to 1879 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 24; Plants - 1766; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
AT4G31550
(UniProt:WRK11_ARATH)
AT4G31550.1member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. 

(UniProt:WRK11_ARATH)
AT4G31550.2member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. 
AT4G31660
(UniProt:REM7_ARATH)
AT4G31660.1transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G24700.1); Has 158 Blast hits to 110 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT4G31680
(UniProt:REM8_ARATH)
AT4G31680.1transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31690.1); Has 264 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT4G36870
(UniProt:BLH2_ARATH)
AT4G36870.1Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves. 

(UniProt:BLH2_ARATH)
AT4G36870.2Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves. 
AT4G36920
(UniProt:AP2_ARATH)
AT4G36920.1Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. 
AT4G37750
(UniProt:ANT_ARATH)
AT4G37750.1ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. 
AT4G39410
(UniProt:WRK13_ARATH)
AT4G39410.1member of WRKY Transcription Factor; Group II-c 
AT5G02030
(UniProt:BLH9_ARATH)
AT5G02030.1Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. 
AT5G04560
(UniProt:DME_ARATH)
AT5G04560.1Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. 

(UniProt:DME_ARATH)
AT5G04560.2Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. 
AT5G07280
(UniProt:EXS_ARATH)
AT5G07280.1Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation 
AT5G10570
(UniProt:BH061_ARATH)
AT5G10570.1basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: bHLH093 (beta HLH protein 93); DNA binding / transcription factor (TAIR:AT5G65640.1); Has 1612 Blast hits to 1612 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 14; Plants - 1483; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 
AT5G13080
(UniProt:WRK75_ARATH)
AT5G13080.1WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. 
AT5G13790
(UniProt:AGL15_ARATH)
AT5G13790.1AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. 
AT5G17790
(UniProt:VAR3_ARATH)
AT5G17790.1Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. 
AT5G18830
(UniProt:SPL7_ARATH)
AT5G18830.1Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c. 

(UniProt:SPL7_ARATH)
AT5G18830.2Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c. 
AT5G20930
(UniProt:TSL_ARATH)
AT5G20930.1Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13. 
AT5G22570
(UniProt:WRK38_ARATH)
AT5G22570.1member of WRKY Transcription Factor; Group III 
AT5G23270
(UniProt:STP11_ARATH)
AT5G23270.1SUGAR TRANSPORTER 11 (STP11); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G50310.1); Has 16883 Blast hits to 16548 proteins in 1108 species: Archae - 229; Bacteria - 6284; Metazoa - 3430; Fungi - 4558; Plants - 1324; Viruses - 0; Other Eukaryotes - 1058 (source: NCBI BLink). 
AT5G23960
(UniProt:HUMS_ARATH)
AT5G23960.1Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma. 
AT5G24110
(UniProt:WRK30_ARATH)
AT5G24110.1member of WRKY Transcription Factor; Group III 
AT5G26170
(UniProt:WRK50_ARATH)
AT5G26170.1member of WRKY Transcription Factor; Group II-c 
AT5G26950
(UniProt:AGL93_ARATH)
AT5G26950.1AGL93; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL53; transcription factor (TAIR:AT5G27070.1); Has 359 Blast hits to 358 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
AT5G27000
(UniProt:ATK4_ARATH)
AT5G27000.1Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner. 
AT5G28650
(UniProt:WRK74_ARATH)
AT5G28650.1member of WRKY Transcription Factor; Group II-d 
AT5G35770
(UniProt:SAP_ARATH)
AT5G35770.1A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development. 
AT5G41570
(UniProt:WRK24_ARATH)
AT5G41570.1member of WRKY Transcription Factor; Group II-c 
AT5G43270
(UniProt:SPL2_ARATH)
AT5G43270.1member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the 

(UniProt:SPL2_ARATH)
AT5G43270.2member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the 

(UniProt:SPL2_ARATH)
AT5G43270.3member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the 
AT5G43940
(UniProt:ADHX_ARATH)
AT5G43940.1Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. 
AT5G45130
(UniProt:RHA1_ARATH)
AT5G45130.1small GTP binding protein 
AT5G46350
(UniProt:WRKY8_ARATH)
AT5G46350.1member of WRKY Transcription Factor; Group II-c 
AT5G46690
(UniProt:BH071_ARATH)
AT5G46690.1beta HLH protein 71 (bHLH071); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH096) (TAIR:AT1G72210.1); Has 759 Blast hits to 756 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 19; Plants - 737; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
AT5G49520
(UniProt:WRK48_ARATH)
AT5G49520.1member of WRKY Transcription Factor; Group II-c 
AT5G52830
(UniProt:WRK27_ARATH)
AT5G52830.1Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. 
AT5G56270
(UniProt:WRKY2_ARATH)
AT5G56270.1WRKY transcription factor 2 
AT5G56600
(UniProt:PROF5_ARATH)
AT5G56600.1Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. 

(UniProt:PROF5_ARATH)
AT5G56600.2Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. 
AT5G61270
(UniProt:PIF7_ARATH)
AT5G61270.1Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation. 

(UniProt:PIF7_ARATH)
AT5G61270.2Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation. 
AT5G64810
(UniProt:WRK51_ARATH)
AT5G64810.1member of WRKY Transcription Factor; Group II-c 
AT5G65050
(UniProt:AGL31_ARATH)
AT5G65050.1Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. 

(UniProt:AGL31_ARATH)
AT5G65050.2Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. 

(UniProt:AGL31_ARATH)
AT5G65050.3Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. 
AT5G65900
(UniProt:RH27_ARATH)
AT5G65900.1DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G18600.1); Has 95183 Blast hits to 55786 proteins in 2102 species: Archae - 497; Bacteria - 14644; Metazoa - 33217; Fungi - 9684; Plants - 3919; Viruses - 789; Other Eukaryotes - 32433 (source: NCBI BLink). 
AT5G67060
(UniProt:HEC1_ARATH)
AT5G67060.1HECATE 1 (HEC1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC2 (HECATE 2); DNA binding / transcription factor (TAIR:AT3G50330.1); Has 2134 Blast hits to 2010 proteins in 139 species: Archae - 2; Bacteria - 175; Metazoa - 184; Fungi - 22; Plants - 1708; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 


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