version

Summary of This Tissue Information (All List)

Organism Arabidopsis thaliana
Tissue Hypocotyl
Total Entry Count 30

Entry Genes (30 entries)

LocusGene modelDescription
AT1G02340
(UniProt:HFR1_ARATH)
AT1G02340.1Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. 
AT1G02560
(UniProt:CLPP5_ARATH)
AT1G02560.1One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 
AT1G04120
(UniProt:AB5C_ARATH)
AT1G04120.1member of MRP subfamily 
AT1G05630
(UniProt:IP5PD_ARATH)
AT1G05630.1Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion. 

(UniProt:IP5PD_ARATH)
AT1G05630.2Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion. 
AT1G06290
(UniProt:ACOX3_ARATH)
AT1G06290.1Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids. 
AT1G50480
(UniProt:FTHS_ARATH)
AT1G50480.110-formyltetrahydrofolate synthetase (THFS) mRNA, complete 
AT1G67710
(UniProt:ARR11_ARATH)
AT1G67710.1Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. 
AT1G69220
(UniProt:O24527_ARATH)
AT1G69220.1Encodes a putative serine/threonine kinase (SIK1). 

(UniProt:O24527_ARATH)
AT1G69220.2Encodes a putative serine/threonine kinase (SIK1). 
AT1G78960
(UniProt:LUP2_ARATH)
AT1G78960.1Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. 
AT1G78970
(UniProt:LUP1_ARATH)
AT1G78970.1Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. 

(UniProt:LUP1_ARATH)
AT1G78970.2Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. 
AT2G19450
(UniProt:Q9SLD2_ARATH)
AT2G19450.1Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development. 
AT2G29980
(UniProt:FAD3E_ARATH)
AT2G29980.1Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 

(UniProt:FAD3E_ARATH)
AT2G29980.2Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 
AT2G42010
(UniProt:PLDB1_ARATH)
AT2G42010.1phospholipase D (PLDbeta) 
AT2G43900
(UniProt:IP5PC_ARATH)
AT2G43900.1inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: sperm cell, male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: 5PTASE13; inositol or phosphatidylinositol phosphatase (TAIR:AT1G05630.2); Has 119228 Blast hits to 28881 proteins in 1158 species: Archae - 293; Bacteria - 30547; Metazoa - 33368; Fungi - 7677; Plants - 3311; Viruses - 1522; Other Eukaryotes - 42510 (source: NCBI BLink). 
AT3G05630
(UniProt:A3KH17_ARATH)
AT3G05630.1Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. 

(UniProt:A3KH17_ARATH)
AT3G05630.1Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. 
AT3G11170
(UniProt:FAD3C_ARATH)
AT3G11170.1Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid. 

(UniProt:FAD3C_ARATH)
AT3G11170.1Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid. 
AT3G45780
(UniProt:PHOT1_ARATH)
AT3G45780.1Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. 

(UniProt:PHOT1_ARATH)
AT3G45780.2Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. 
AT4G15340
(UniProt:PEN1_ARATH)
AT4G15340.1Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast. 
AT4G18010
(UniProt:IP5P2_ARATH)
AT4G18010.1Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays. 

(UniProt:IP5P2_ARATH)
AT4G18010.2Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays. 
AT4G32500
(UniProt:AKT5_ARATH)
AT4G32500.1member of Stelar K+ outward rectifying channel (SKOR) family 
AT5G05580
(UniProt:FAD3D_ARATH)
AT5G05580.1Encodes a temperature sensitive plastidic fatty acid desaturase. 
AT5G62190
(UniProt:RH7_ARATH)
AT5G62190.1DEAD/DEAH box RNA helicase PRH75 


Copyright(c) 2007- ppdb Stirring Committee. All Rights Reserved.