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Summary of This Tissue Information (All List)

Organism Arabidopsis thaliana
Tissue Seedling
Total Entry Count 189

Entry Genes (189 entries)

LocusGene modelDescription
AT1G01820
(UniProt:PX11C_ARATH)
AT1G01820.1member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. 
AT1G06680
(UniProt:PSBP1_ARATH)
AT1G06680.1Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. 

(UniProt:PSBP1_ARATH)
AT1G06680.2Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. 
AT1G08490
(UniProt:NFS2_ARATH)
AT1G08490.1Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation. 

(UniProt:NFS2_ARATH)
AT1G08490.1Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation. 
AT1G10130
(UniProt:ECA3_ARATH)
AT1G10130.1Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis. 
AT1G11750
(UniProt:CLPP6_ARATH)
AT1G11750.1One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 
AT1G11860
(UniProt:GCST_ARATH)
AT1G11860.1aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink). 

(UniProt:GCST_ARATH)
AT1G11860.2aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink). 
AT1G12760
(UniProt:B9DH70_ARATH)
AT1G12760.1protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6688 Blast hits to 6669 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2304; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink). 

(UniProt:B9DH70_ARATH)
AT1G12760.2protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6688 Blast hits to 6669 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2304; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink). 
AT1G13080
(UniProt:C71B2_ARATH)
AT1G13080.1cytochrome P450 monooxygenase 

(UniProt:C71B2_ARATH)
AT1G13080.1cytochrome P450 monooxygenase 

(UniProt:C71B2_ARATH)
AT1G13080.2cytochrome P450 monooxygenase 

(UniProt:C71B2_ARATH)
AT1G13080.2cytochrome P450 monooxygenase 
AT1G13260
(UniProt:RAV1_ARATH)
AT1G13260.1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. 
AT1G14980
(UniProt:CH10_ARATH)
AT1G14980.1Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. 
AT1G22920
(UniProt:CSN5B_ARATH)
AT1G22920.1AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. 

(UniProt:CSN5B_ARATH)
AT1G22920.2AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. 
AT1G23290
(UniProt:R27A2_ARATH)
AT1G23290.1Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20. 
AT1G35720
(UniProt:ANXD1_ARATH)
AT1G35720.1Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion. 
AT1G43170
(UniProt:RL31_ARATH)
AT1G43170.1Encodes a cytoplasmic ribosomal protein. 

(UniProt:RL31_ARATH)
AT1G43170.2Encodes a cytoplasmic ribosomal protein. 

(UniProt:RL31_ARATH)
AT1G43170.3Encodes a cytoplasmic ribosomal protein. 

(UniProt:RL31_ARATH)
AT1G43170.4Encodes a cytoplasmic ribosomal protein. 
AT1G45249
(UniProt:AI5L5_ARATH)
AT1G45249.1Leucine zipper transcription factor that binds to the abscisic acid (ABA)–responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus. Expressed constitutively in roots, leaf vascular tissues, and hydathodes or in all tissues under stress conditions. It's phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment. 

(UniProt:AI5L5_ARATH)
AT1G45249.2Leucine zipper transcription factor that binds to the abscisic acid (ABA)–responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus. Expressed constitutively in roots, leaf vascular tissues, and hydathodes or in all tissues under stress conditions. It's phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment. 
AT1G47750
(UniProt:PX11A_ARATH)
AT1G47750.1member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. 
AT1G49720
(UniProt:AI5L4_ARATH)
AT1G49720.1Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. 
AT1G50430
(UniProt:ST7R_ARATH)
AT1G50430.1Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype. 

(UniProt:ST7R_ARATH)
AT1G50430.2Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype. 
AT1G51700
(UniProt:DOF17_ARATH)
AT1G51700.1Encodes dof zinc finger protein (adof1). 
AT1G60490
(UniProt:PI3K_ARATH)
AT1G60490.1Encodes a phosphatidylinositol 3-kinase that is expressed in most plant tissues. Defects in VPS34 affect a number of celluar processes. Loss of function mutations are not transmitted through the male gametophyte due to defects in microgametogenesis therefore it is difficult to assess the effects of loss of VPS34 function in the whole plant. 
AT1G62180
(UniProt:APR2_ARATH)
AT1G62180.1encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. 
AT1G65430
(UniProt:ARI8_ARATH)
AT1G65430.1zinc finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 2292 Blast hits to 2274 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 1174; Fungi - 360; Plants - 363; Viruses - 3; Other Eukaryotes - 392 (source: NCBI BLink). 
AT1G66350
(UniProt:RGL1_ARATH)
AT1G66350.1Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. 
AT1G66670
(UniProt:CLPP3_ARATH)
AT1G66670.1One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 
AT1G68840
(UniProt:RAV2_ARATH)
AT1G68840.1Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) 
AT1G70210
(UniProt:CCD11_ARATH)
AT1G70210.1Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination. 
AT1G70510
(UniProt:KNAT2_ARATH)
AT1G70510.1A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. 
AT1G71230
(UniProt:CSN5A_ARATH)
AT1G71230.1Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses. 
AT1G71890
(UniProt:SUC5_ARATH)
AT1G71890.1Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. 
AT1G72610
(UniProt:GL31_ARATH)
AT1G72610.1germin-like protein (GLP1) 
AT1G76030
(UniProt:VATB1_ARATH)
AT1G76030.1Encodes the vacuolar ATP synthase subunit B1. This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus. 
AT1G76090
(UniProt:SMT3B_ARATH)
AT1G76090.1Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. 
AT1G79840
(UniProt:HGL2_ARATH)
AT1G79840.1Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. 
AT1G80300
(UniProt:TLC1_ARATH)
AT1G80300.1NUCLEOTIDE TRANSPORTER 1 (NTT1); FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: stem, guard cell, root, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: ATNTT2; ATP:ADP antiporter (TAIR:AT1G15500.1); Has 587 Blast hits to 585 proteins in 128 species: Archae - 0; Bacteria - 365; Metazoa - 2; Fungi - 15; Plants - 64; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). 
AT2G01250
(UniProt:A8MRH4_ARATH)
AT2G01250.160S ribosomal protein L7 (RPL7B); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 979 Blast hits to 977 proteins in 287 species: Archae - 144; Bacteria - 0; Metazoa - 384; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink). 

(UniProt:A8MRH4_ARATH)
AT2G01250.260S ribosomal protein L7 (RPL7B); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 979 Blast hits to 977 proteins in 287 species: Archae - 144; Bacteria - 0; Metazoa - 384; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink). 
AT2G03450
(UniProt:PPA9_ARATH)
AT2G03450.1PURPLE ACID PHOSPHATASE 9 (PAP9); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G13900.1); Has 1035 Blast hits to 1027 proteins in 232 species: Archae - 2; Bacteria - 258; Metazoa - 181; Fungi - 58; Plants - 400; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 
AT2G15570
(UniProt:TRXM3_ARATH)
AT2G15570.1chloroplast protein similar to prokaryotic thioredoxin. 

(UniProt:TRXM3_ARATH)
AT2G15570.2chloroplast protein similar to prokaryotic thioredoxin. 
AT2G18130
(UniProt:PPA11_ARATH)
AT2G18130.1PURPLE ACID PHOSPHATASE 11 (PAP11); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP5 (PURPLE ACID PHOSPHATASE 5); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G52940.1); Has 1091 Blast hits to 1080 proteins in 235 species: Archae - 2; Bacteria - 259; Metazoa - 165; Fungi - 62; Plants - 443; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). 
AT2G22490
(UniProt:CCD21_ARATH)
AT2G22490.1encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A. 
AT2G22990
(UniProt:SCP8_ARATH)
AT2G22990.1sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 

(UniProt:SCP8_ARATH)
AT2G22990.2sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 

(UniProt:SCP8_ARATH)
AT2G22990.3sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 

(UniProt:SCP8_ARATH)
AT2G22990.4sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 

(UniProt:SCP8_ARATH)
AT2G22990.5sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 

(UniProt:SCP8_ARATH)
AT2G22990.6sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. 
AT2G23410
(UniProt:DDPS1_ARATH)
AT2G23410.1encodes cis-prenyltransferase 
AT2G24180
(UniProt:C71B6_ARATH)
AT2G24180.1cytochrome P450 monooxygenase 
AT2G26430
(UniProt:A8MR67_ARATH)
AT2G26430.1Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. 

(UniProt:A8MR67_ARATH)
AT2G26430.2Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. 

(UniProt:A8MR67_ARATH)
AT2G26430.3Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. 
AT2G27030
(UniProt:CALM2_ARATH)
AT2G27030.1encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. 

(UniProt:CALM2_ARATH)
AT2G27030.2encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. 

(UniProt:CALM2_ARATH)
AT2G27030.3encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. 
AT2G27720
(UniProt:RLA21_ARATH)
AT2G27720.160S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3). 

(UniProt:RLA21_ARATH)
AT2G27720.260S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3). 

(UniProt:RLA21_ARATH)
AT2G27720.360S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3). 
AT2G29980
(UniProt:FAD3E_ARATH)
AT2G29980.1Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 

(UniProt:FAD3E_ARATH)
AT2G29980.2Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. 
AT2G30390
(UniProt:HEMH2_ARATH)
AT2G30390.1Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromes 
AT2G30490
(UniProt:TCMO_ARATH)
AT2G30490.1Encodes a cinnamate-4-hydroxylase. 
AT2G30570
(UniProt:PSBW_ARATH)
AT2G30570.1Encodes a protein similar to photosystem II reaction center subunit W. 
AT2G32390
(UniProt:GLR35_ARATH)
AT2G32390.1Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family 

(UniProt:GLR35_ARATH)
AT2G32390.2Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family 
AT2G32400
(UniProt:GLR37_ARATH)
AT2G32400.1Glr5 
AT2G32950
(UniProt:COP1_ARATH)
AT2G32950.1Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. 

(UniProt:COP1_ARATH)
AT2G32950.1Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. 
AT2G33310
(UniProt:IAA13_ARATH)
AT2G33310.1Auxin induced gene, IAA13 (IAA13). 

(UniProt:IAA13_ARATH)
AT2G33310.2Auxin induced gene, IAA13 (IAA13). 

(UniProt:IAA13_ARATH)
AT2G33310.3Auxin induced gene, IAA13 (IAA13). 
AT2G34660
(UniProt:AB2C_ARATH)
AT2G34660.1encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. 
AT2G36830
(UniProt:TIP11_ARATH)
AT2G36830.1encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Complete knock out mutants have no detectable phenotype from the wild type. 

(UniProt:TIP11_ARATH)
AT2G36830.1encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Complete knock out mutants have no detectable phenotype from the wild type. 
AT2G39780
(UniProt:RNS2_ARATH)
AT2G39780.1S-like ribonuclease 

(UniProt:RNS2_ARATH)
AT2G39780.2S-like ribonuclease 
AT2G40590
(UniProt:RS261_ARATH)
AT2G40590.140S ribosomal protein S26 (RPS26B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S26 (RPS26A) (TAIR:AT2G40510.1); Has 605 Blast hits to 605 proteins in 200 species: Archae - 32; Bacteria - 0; Metazoa - 279; Fungi - 107; Plants - 80; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). 
AT2G41700
(UniProt:AB1A_ARATH)
AT2G41700.1ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 474223 Blast hits to 224447 proteins in 2607 species: Archae - 8707; Bacteria - 325328; Metazoa - 13868; Fungi - 7154; Plants - 4676; Viruses - 52; Other Eukaryotes - 114438 (source: NCBI BLink). 

(UniProt:AB1A_ARATH)
AT2G41700.2ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 474223 Blast hits to 224447 proteins in 2607 species: Archae - 8707; Bacteria - 325328; Metazoa - 13868; Fungi - 7154; Plants - 4676; Viruses - 52; Other Eukaryotes - 114438 (source: NCBI BLink). 
AT2G44790
(UniProt:BCB2_ARATH)
AT2G44790.1Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. 
AT2G45560
(UniProt:C76C1_ARATH)
AT2G45560.1cytochrome P450 monooxygenase 

(UniProt:C76C1_ARATH)
AT2G45560.2cytochrome P450 monooxygenase 
AT2G45960
(UniProt:PIP12_ARATH)
AT2G45960.1a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. 

(UniProt:PIP12_ARATH)
AT2G45960.2a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. 

(UniProt:PIP12_ARATH)
AT2G45960.3a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. 
AT2G47580
(UniProt:Q39244_ARATH)
AT2G47580.1encodes spliceosomal protein U1A 

(UniProt:Q39244_ARATH)
AT2G47580.1encodes spliceosomal protein U1A 
AT3G01090
(UniProt:KIN10_ARATH)
AT3G01090.1encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase 

(UniProt:KIN10_ARATH)
AT3G01090.2encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase 

(UniProt:KIN10_ARATH)
AT3G01090.3encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase 
AT3G09200
(UniProt:RLA02_ARATH)
AT3G09200.160S acidic ribosomal protein P0 (RPP0B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, response to cold, translation; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 1212 Blast hits to 1209 proteins in 357 species: Archae - 223; Bacteria - 1; Metazoa - 420; Fungi - 182; Plants - 109; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). 

(UniProt:RLA02_ARATH)
AT3G09200.260S acidic ribosomal protein P0 (RPP0B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, response to cold, translation; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 1212 Blast hits to 1209 proteins in 357 species: Archae - 223; Bacteria - 1; Metazoa - 420; Fungi - 182; Plants - 109; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). 
AT3G10330
(UniProt:TF2B2_ARATH)
AT3G10330.1transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2); FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G41630.1); Has 1521 Blast hits to 1508 proteins in 255 species: Archae - 348; Bacteria - 0; Metazoa - 268; Fungi - 189; Plants - 107; Viruses - 10; Other Eukaryotes - 599 (source: NCBI BLink). 
AT3G10410
(UniProt:SCP49_ARATH)
AT3G10410.1serine carboxypeptidase-like 49 (scpl49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2453 Blast hits to 2354 proteins in 260 species: Archae - 0; Bacteria - 98; Metazoa - 602; Fungi - 570; Plants - 872; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). 
AT3G14290
(UniProt:PSA5B_ARATH)
AT3G14290.1Encodes 20S proteasome subunit PAE2 (PAE2). 
AT3G14940
(UniProt:CAPP3_ARATH)
AT3G14940.1One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. 
AT3G16240
(UniProt:TIP21_ARATH)
AT3G16240.1Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. 
AT3G16370
(UniProt:APG2_ARATH)
AT3G16370.1GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT5G22810.1); Has 1979 Blast hits to 1962 proteins in 227 species: Archae - 0; Bacteria - 355; Metazoa - 1; Fungi - 24; Plants - 1578; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 
AT3G18000
(UniProt:PEAM1_ARATH)
AT3G18000.1Arabidopsis thaliana N-methyltransferase-like protein mRNA. 
AT3G18780
(UniProt:Q0WL95_ARATH)
AT3G18780.1Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs. 

(UniProt:Q0WL95_ARATH)
AT3G18780.2Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs. 
AT3G19290
(UniProt:AI5L7_ARATH)
AT3G19290.1bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. 

(UniProt:AI5L7_ARATH)
AT3G19290.2bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. 
AT3G20500
(UniProt:PPA18_ARATH)
AT3G20500.1PURPLE ACID PHOSPHATASE 18 (PAP18); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52820.1); Has 1308 Blast hits to 1297 proteins in 293 species: Archae - 2; Bacteria - 397; Metazoa - 190; Fungi - 60; Plants - 434; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink). 
AT3G21055
(UniProt:PST2_ARATH)
AT3G21055.1Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc). 
AT3G21270
(UniProt:DOF31_ARATH)
AT3G21270.1Encodes Dof zinc finger protein adof2. 
AT3G21720
(UniProt:ACEA_ARATH)
AT3G21720.1Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). 
AT3G26220
(UniProt:C71B3_ARATH)
AT3G26220.1cytochrome P450 monooxygenase 
AT3G26280
(UniProt:C71B4_ARATH)
AT3G26280.1cytochrome P450 monooxygenase 
AT3G26520
(UniProt:TIP12_ARATH)
AT3G26520.1gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein. 
AT3G28860
(UniProt:AB19B_ARATH)
AT3G28860.1Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. 
AT3G29160
(UniProt:KIN11_ARATH)
AT3G29160.1encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. 

(UniProt:KIN11_ARATH)
AT3G29160.2encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. 

(UniProt:KIN11_ARATH)
AT3G29160.3encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. 
AT3G46460
(UniProt:UBC13_ARATH)
AT3G46460.1ubiquitin-conjugating enzyme 13 (UBC13); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase (TAIR:AT3G55380.1); Has 7555 Blast hits to 7535 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 3565; Fungi - 1492; Plants - 1176; Viruses - 19; Other Eukaryotes - 1303 (source: NCBI BLink). 
AT3G46740
(UniProt:TC753_ARATH)
AT3G46740.1Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. 
AT3G47430
(UniProt:PX11B_ARATH)
AT3G47430.1member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. 
AT3G47930
(UniProt:GLDH_ARATH)
AT3G47930.1L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis 

(UniProt:GLDH_ARATH)
AT3G47930.2L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis 
AT3G49120
(UniProt:PER34_ARATH)
AT3G49120.1Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. 
AT3G50970
(UniProt:XERO2_ARATH)
AT3G50970.1Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. 
AT3G53280
(UniProt:C71B5_ARATH)
AT3G53280.1cytochrome P450 monooxygenase 
AT3G61070
(UniProt:PX11E_ARATH)
AT3G61070.1member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. 

(UniProt:PX11E_ARATH)
AT3G61070.2member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. 
AT4G00100
(UniProt:RS132_ARATH)
AT4G00100.1Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development 
AT4G01850
(UniProt:METK2_ARATH)
AT4G01850.1S-ADENOSYLMETHIONINE SYNTHETASE 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase (TAIR:AT1G02500.2); Has 8027 Blast hits to 8026 proteins in 1640 species: Archae - 6; Bacteria - 2999; Metazoa - 309; Fungi - 111; Plants - 502; Viruses - 0; Other Eukaryotes - 4100 (source: NCBI BLink). 

(UniProt:METK2_ARATH)
AT4G01850.2S-ADENOSYLMETHIONINE SYNTHETASE 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase (TAIR:AT1G02500.2); Has 8027 Blast hits to 8026 proteins in 1640 species: Archae - 6; Bacteria - 2999; Metazoa - 309; Fungi - 111; Plants - 502; Viruses - 0; Other Eukaryotes - 4100 (source: NCBI BLink). 
AT4G02080
(UniProt:SAR1A_ARATH)
AT4G02080.1A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. 
AT4G09080
(UniProt:TC754_ARATH)
AT4G09080.1Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts. 
AT4G11680
(UniProt:RING4_ARATH)
AT4G11680.1zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6313 Blast hits to 6295 proteins in 208 species: Archae - 0; Bacteria - 6; Metazoa - 2195; Fungi - 451; Plants - 2639; Viruses - 29; Other Eukaryotes - 993 (source: NCBI BLink). 
AT4G13770
(UniProt:C83A1_ARATH)
AT4G13770.1Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. 
AT4G17340
(UniProt:TIP22_ARATH)
AT4G17340.1TONOPLAST INTRINSIC PROTEIN 2;2 (TIP2;2); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel (TAIR:AT5G47450.1); Has 6879 Blast hits to 6845 proteins in 1255 species: Archae - 57; Bacteria - 2652; Metazoa - 1285; Fungi - 264; Plants - 1472; Viruses - 2; Other Eukaryotes - 1147 (source: NCBI BLink). 
AT4G31500
(UniProt:C83B1_ARATH)
AT4G31500.1Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction. 
AT4G34000
(UniProt:AI5L6_ARATH)
AT4G34000.1Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. 

(UniProt:AI5L6_ARATH)
AT4G34000.2Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. 

(UniProt:AI5L6_ARATH)
AT4G34000.3Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. 
AT4G34160
(UniProt:CCD31_ARATH)
AT4G34160.1encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. 
AT4G34670
(UniProt:RS3A2_ARATH)
AT4G34670.140S ribosomal protein S3A (RPS3aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3A (RPS3aA) (TAIR:AT3G04840.1); Has 941 Blast hits to 936 proteins in 297 species: Archae - 150; Bacteria - 1; Metazoa - 370; Fungi - 111; Plants - 126; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). 
AT4G37430
(UniProt:C81F1_ARATH)
AT4G37430.1Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily. 
AT4G38630
(UniProt:PSMD4_ARATH)
AT4G38630.1Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities 
AT5G03730
(UniProt:CTR1_ARATH)
AT5G03730.1Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. 

(UniProt:CTR1_ARATH)
AT5G03730.2Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. 
AT5G04150
(UniProt:BH101_ARATH)
AT5G04150.1BHLH101; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH038; DNA binding / transcription factor (TAIR:AT3G56970.1); Has 328 Blast hits to 327 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 2; Plants - 180; Viruses - 9; Other Eukaryotes - 20 (source: NCBI BLink). 
AT5G10360
(UniProt:RS62_ARATH)
AT5G10360.1embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (TAIR:AT4G31700.1); Has 832 Blast hits to 830 proteins in 304 species: Archae - 152; Bacteria - 0; Metazoa - 342; Fungi - 112; Plants - 80; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). 
AT5G11260
(UniProt:HY5_ARATH)
AT5G11260.1Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. 
AT5G14740
(UniProt:CAH2_ARATH)
AT5G14740.1Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. 

(UniProt:CAH2_ARATH)
AT5G14740.2Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. 

(UniProt:CAH2_ARATH)
AT5G14740.3Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. 

(UniProt:CAH2_ARATH)
AT5G14740.4Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. 

(UniProt:CAH2_ARATH)
AT5G14740.5Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. 
AT5G15180
(UniProt:PER56_ARATH)
AT5G15180.1peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 27 (PER27) (P27) (PRXR7) (TAIR:AT3G01190.1); Has 2845 Blast hits to 2829 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 47; Plants - 2769; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 
AT5G20720
(UniProt:CH10C_ARATH)
AT5G20720.1Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. 

(UniProt:CH10C_ARATH)
AT5G20720.1Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. 

(UniProt:CH10C_ARATH)
AT5G20720.2Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. 

(UniProt:CH10C_ARATH)
AT5G20720.2Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. 
AT5G20920
(UniProt:IF2B_ARATH)
AT5G20920.1protein synthesis initiation factor eIF2 beta 

(UniProt:IF2B_ARATH)
AT5G20920.2protein synthesis initiation factor eIF2 beta 

(UniProt:IF2B_ARATH)
AT5G20920.3protein synthesis initiation factor eIF2 beta 
AT5G21222
(UniProt:PP395_ARATH)
AT5G21222.1protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Pentatricopeptide repeat (InterPro:IPR002885), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G25630.1); Has 114429 Blast hits to 95597 proteins in 2212 species: Archae - 72; Bacteria - 8552; Metazoa - 38934; Fungi - 9044; Plants - 38583; Viruses - 478; Other Eukaryotes - 18766 (source: NCBI BLink). 
AT5G24400
(UniProt:6PGL5_ARATH)
AT5G24400.1embryo defective 2024 (emb2024); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, carbohydrate metabolic process; LOCATED IN: peroxisome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase family protein (TAIR:AT3G49360.1); Has 3220 Blast hits to 3220 proteins in 1016 species: Archae - 0; Bacteria - 1954; Metazoa - 327; Fungi - 237; Plants - 85; Viruses - 0; Other Eukaryotes - 617 (source: NCBI BLink). 
AT5G26030
(UniProt:HEMH1_ARATH)
AT5G26030.1encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins 

(UniProt:HEMH1_ARATH)
AT5G26030.2encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins 
AT5G45390
(UniProt:CLPP4_ARATH)
AT5G45390.1One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 
AT5G46280
(UniProt:MCM3_ARATH)
AT5G46280.1DNA replication licensing factor, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication initiation, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G02060.1); Has 3051 Blast hits to 2962 proteins in 393 species: Archae - 239; Bacteria - 212; Metazoa - 971; Fungi - 565; Plants - 257; Viruses - 3; Other Eukaryotes - 804 (source: NCBI BLink). 
AT5G46360
(UniProt:KCO3_ARATH)
AT5G46360.1Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. 
AT5G50320
(UniProt:ELP3_ARATH)
AT5G50320.1A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. 
AT5G50870
(UniProt:UBC27_ARATH)
AT5G50870.1ubiquitin-conjugating enzyme 27 (UBC27); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase (TAIR:AT5G41700.4); Has 7501 Blast hits to 7499 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 3692; Fungi - 1438; Plants - 1085; Viruses - 19; Other Eukaryotes - 1267 (source: NCBI BLink). 
AT5G56030
(UniProt:HSP82_ARATH)
AT5G56030.1a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. 
AT5G59030
(UniProt:COPT1_ARATH)
AT5G59030.1encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains 
AT5G59300
(UniProt:UBC7_ARATH)
AT5G59300.1ubiquitin conjugating enzyme E2 
AT5G62050
(UniProt:OXA1_ARATH)
AT5G62050.1essential factor for protein sorting and assembly into membranes 
AT5G64920
(UniProt:CIP8_ARATH)
AT5G64920.1Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. 
AT5G65800
(UniProt:1A15_ARATH)
AT5G65800.11-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition. 
AT5G66040
(UniProt:STR16_ARATH)
AT5G66040.1SULFURTRANSFERASE PROTEIN 16 (STR16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: SEN1 (SENESCENCE 1) (TAIR:AT4G35770.1); Has 2229 Blast hits to 2226 proteins in 583 species: Archae - 32; Bacteria - 1489; Metazoa - 53; Fungi - 31; Plants - 139; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink). 

(UniProt:STR16_ARATH)
AT5G66040.2SULFURTRANSFERASE PROTEIN 16 (STR16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: SEN1 (SENESCENCE 1) (TAIR:AT4G35770.1); Has 2229 Blast hits to 2226 proteins in 583 species: Archae - 32; Bacteria - 1489; Metazoa - 53; Fungi - 31; Plants - 139; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink). 
ATCG00670
(UniProt:CLPP1_ARATH)
ATCG00670.1Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). 


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